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WormBase Tree Display for Variation: WBVar00118844

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Name Class

WBVar00118844EvidencePaper_evidenceWBPaper00030778
NamePublic_nameWBVar00118844
Other_namecbs54365
HGVSgchrI:g.10081138C>G
Sequence_detailsSMapS_parentSequencecb25.fpc2888a2
Flanking_sequencesaacaaccgcagcctcaacagctcccgcacgaacaattacaacaaatagttgtctgcaacagcaacagcaacaagagttgctgcttcaacaggagcagcgg
Mapping_targetcb25.fpc2888a2
Type_of_mutationSubstitutionCG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestCCGCAciI311 237 216 99 53 45 18 12 9
CAGNNNCTGAlwNI, CaiI1000
TGCACviRI, HpyCH4V343 286 209 162
CACHindI148 129 112 108 101 81 42 41 37 37 36 30 26 21 12 10 10 9 8 2
Polymorphic_strain_digestCCGCAciI311 237 234 99 53 45 12 9
CAGNNNCTGAlwNI, CaiI528 472
TGCACviRI, HpyCH4V343 286 209 132 30
CACHindI129 120 112 108 101 81 42 41 37 37 36 30 26 26 21 12 10 10 9 8 2 2
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00033628
TranscriptCBG12722a.1VEP_consequencemissense_variant
VEP_impactMODERATE
HGVScCBG12722a.1:c.229C>G
HGVSpCBP17572.1:p.Arg77Gly
cDNA_position229
CDS_position229
Protein_position77
Exon_number1/13
Codon_changeCgt/Ggt
Amino_acid_changeR/G
CBG12722b.1VEP_consequencemissense_variant
VEP_impactMODERATE
HGVScCBG12722b.1:c.229C>G
HGVSpCBP46360.1:p.Arg77Gly
cDNA_position229
CDS_position229
Protein_position77
Exon_number1/12
Codon_changeCgt/Ggt
Amino_acid_changeR/G
CBG12722c.1VEP_consequencemissense_variant
VEP_impactMODERATE
HGVScCBG12722c.1:c.229C>G
HGVSpCBP44318.1:p.Arg77Gly
cDNA_position230
CDS_position229
Protein_position77
Exon_number2/13
Codon_changeCgt/Ggt
Amino_acid_changeR/G
ReferenceWBPaper00030778
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP