WormBase Tree Display for Variation: WBVar00118844
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WBVar00118844 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00118844 | ||||
Other_name | cbs54365 | |||||
HGVSg | chrI:g.10081138C>G | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc2888a2 | ||
Flanking_sequences | aacaaccgcagcctcaacagctcccgcacgaacaattacaacaaatagtt | gtctgcaacagcaacagcaacaagagttgctgcttcaacaggagcagcgg | ||||
Mapping_target | cb25.fpc2888a2 | |||||
Type_of_mutation | Substitution | C | G | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | CCGC | AciI | 311 237 216 99 53 45 18 12 9 | ||
CAGNNNCTG | AlwNI, CaiI | 1000 | ||||
TGCA | CviRI, HpyCH4V | 343 286 209 162 | ||||
CAC | HindI | 148 129 112 108 101 81 42 41 37 37 36 30 26 21 12 10 10 9 8 2 | ||||
Polymorphic_strain_digest | CCGC | AciI | 311 237 234 99 53 45 12 9 | |||
CAGNNNCTG | AlwNI, CaiI | 528 472 | ||||
TGCA | CviRI, HpyCH4V | 343 286 209 132 30 | ||||
CAC | HindI | 129 120 112 108 101 81 42 41 37 37 36 30 26 26 21 12 10 10 9 8 2 2 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00033628 | ||||
Transcript | CBG12722a.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | |||||
HGVSc | CBG12722a.1:c.229C>G | |||||
HGVSp | CBP17572.1:p.Arg77Gly | |||||
cDNA_position | 229 | |||||
CDS_position | 229 | |||||
Protein_position | 77 | |||||
Exon_number | 1/13 | |||||
Codon_change | Cgt/Ggt | |||||
Amino_acid_change | R/G | |||||
CBG12722b.1 | VEP_consequence | missense_variant | ||||
VEP_impact | MODERATE | |||||
HGVSc | CBG12722b.1:c.229C>G | |||||
HGVSp | CBP46360.1:p.Arg77Gly | |||||
cDNA_position | 229 | |||||
CDS_position | 229 | |||||
Protein_position | 77 | |||||
Exon_number | 1/12 | |||||
Codon_change | Cgt/Ggt | |||||
Amino_acid_change | R/G | |||||
CBG12722c.1 | VEP_consequence | missense_variant | ||||
VEP_impact | MODERATE | |||||
HGVSc | CBG12722c.1:c.229C>G | |||||
HGVSp | CBP44318.1:p.Arg77Gly | |||||
cDNA_position | 230 | |||||
CDS_position | 229 | |||||
Protein_position | 77 | |||||
Exon_number | 2/13 | |||||
Codon_change | Cgt/Ggt | |||||
Amino_acid_change | R/G | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |