WormBase Tree Display for Variation: WBVar00118873

WBVar00118873 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00118873
    Other_name: cbs54394
      cb54394 Paper_evidence: WBPaper00055507
    HGVSg: chrI:g.10152962A>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2888a2
    Flanking_sequences: attgatttgattgggagattattag ttctaggattctgaaattctgaaac
    Mapping_target: cb25.fpc2888a2
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GCNGC BthCI, Fnu4HI, Fsp4HI, ItaI, SatI 550 450
        GANTC HinfI 486 370 129 8 7
        TTAA MseI, Tru1I, Tru9I 568 396 24 12
        GAWTC TfiI 486 370 129 8 7
        GCWGC TseI 547 453
      Polymorphic_strain_digest: GCNGC BthCI, Fnu4HI, Fsp4HI, ItaI, SatI 1000
        GANTC HinfI 486 378 129 7
        TTAA MseI, Tru1I, Tru9I 396 338 230 24 12
        GAWTC TfiI 486 378 129 7
        GCWGC TseI 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00033643
    Transcript: CBG12737.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG12737.1:c.160-144A>G
        Intron_number: 3/4
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP