WormBase Tree Display for Variation: WBVar00120937

WBVar00120937 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00120937
    Other_name: cbs56458
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: agacgggccgtggtttttgtgacgagaagaaaaagagccatccggaaatt tgggccaatttgaagaatgggaaaaaaaggggaggacgaatggaaaacga
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: A T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCGC AciI 1000
        RAATTY AcsI, ApoI, XapI 405 311 198 64 22
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 885 115
        AGATCT BglII 885 115
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 1000
        RGCY CviJI, CviTI 309 210 158 89 71 60 55 30 18
        GAATTC EcoRI, FunII 716 198 86
        CAC HindI 173 150 88 86 77 48 48 46 45 41 32 30 29 17 15 12 11 10 9 9 7 4 4 3 2 2 2
        TTAA MseI, Tru1I, Tru9I 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 287 216 120 84 78 64 43 30 30 22 15 11
      Polymorphic_strain_digest: CCGC AciI 614 386
        RAATTY AcsI, ApoI, XapI 405 216 198 95 64 22
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 885 75 40
        AGATCT BglII 1000
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 504 496
        RGCY CviJI, CviTI 309 210 158 71 67 60 55 30 22 18
        GAATTC EcoRI, FunII 716 284
        CAC HindI 173 150 106 88 77 62 48 48 46 41 39 30 17 12 11 10 9 9 7 4 4 3 2 2 2
        TTAA MseI, Tru1I, Tru9I 598 402
        AATT Sse9I, TasI, Tsp509I, TspEI 287 120 117 99 95 78 64 43 30 30 22 15
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP