WormBase Tree Display for Variation: WBVar00120993
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| WBVar00120993 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00120993 | ||||
| Other_name | cbs56514 | |||||
| HGVSg | chrX:g.8145776T>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
| Flanking_sequences | tctctcagcatcctggaaaagaggttaagaaaggtctcgaacaactgtac | aaaagattgagaagaatctggttgccaactcgtcccttcttcaagtcgtc | ||||
| Mapping_target | cb25.fpc3857a | |||||
| Type_of_mutation | Substitution | A | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | TGTACA | AauI, Bsp1407I, BsrGI, SspBI | 500 500 | ||
| TGCGCA | Acc16I, AviII, FspI, MstI, NsbI | 1000 | ||||
| CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 943 57 | ||||
| CAC | HindI | 238 201 139 92 88 81 58 51 29 15 5 3 | ||||
| WGTACW | TatI | 500 225 133 96 46 | ||||
| Polymorphic_strain_digest | TGTACA | AauI, Bsp1407I, BsrGI, SspBI | 1000 | |||
| TGCGCA | Acc16I, AviII, FspI, MstI, NsbI | 942 58 | ||||
| CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 1000 | ||||
| CAC | HindI | 238 201 139 92 88 81 58 43 29 15 8 5 3 | ||||
| WGTACW | TatI | 596 225 133 46 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00034730 | ||||
| Transcript | CBG14132.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG14132.1:c.2350A>C | |||||
| HGVSp | CBP03530.1:p.Lys784Gln | |||||
| cDNA_position | 2356 | |||||
| CDS_position | 2350 | |||||
| Protein_position | 784 | |||||
| Exon_number | 13/14 | |||||
| Codon_change | Aaa/Caa | |||||
| Amino_acid_change | K/Q | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
