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WormBase Tree Display for Variation: WBVar00121162

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Name Class

WBVar00121162EvidencePaper_evidenceWBPaper00030778
NamePublic_nameWBVar00121162
Other_namecbs56683
Sequence_detailsSMapS_parentSequencecb25.fpc3857a
Flanking_sequencescaccttgttaataatctcccgaatgacaaattgttctcaccttttgacattgaacttgccgacattttggtgcatgaagtgtaaaggatgagatctctct
Mapping_targetcb25.fpc3857a
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestCCGCAciI960 40
GCNGCBthCI, Fnu4HI, Fsp4HI, ItaI, SatI497 246 216 41
CATGCviAII, FatI, HpyCH4I, Hsp92II, NlaIII341 244 184 74 52 46 32 20 7
TGCACviRI, HpyCH4V523 254 109 78 36
CACHindI201 155 93 78 69 48 43 42 37 35 34 29 26 26 24 23 20 9 8
TCNGAHpy188I217 202 164 135 134 71 39 38
TTAAMseI, Tru1I, Tru9I290 273 147 94 91 35 28 20 13 9
GCSGCTauI716 246 38
Polymorphic_strain_digestCCGCAciI487 473 40
GCNGCBthCI, Fnu4HI, Fsp4HI, ItaI, SatI252 246 245 216 41
CATGCviAII, FatI, HpyCH4I, Hsp92II, NlaIII585 184 74 52 46 32 20 7
TGCACviRI, HpyCH4V559 254 109 78
CACHindI201 155 93 78 71 69 48 43 42 35 29 26 26 24 23 20 8 5 4
TCNGAHpy188I235 217 202 135 134 39 38
TTAAMseI, Tru1I, Tru9I364 290 147 94 35 28 20 13 9
GCSGCTauI471 246 245 38
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
ReferenceWBPaper00030778
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP