WormBase Tree Display for Variation: WBVar00121162
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WBVar00121162 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00121162 | ||||
Other_name | cbs56683 | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
Flanking_sequences | caccttgttaataatctcccgaatgacaaattgttctcaccttttgacat | tgaacttgccgacattttggtgcatgaagtgtaaaggatgagatctctct | ||||
Mapping_target | cb25.fpc3857a | |||||
Type_of_mutation | Substitution | C | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | CCGC | AciI | 960 40 | ||
GCNGC | BthCI, Fnu4HI, Fsp4HI, ItaI, SatI | 497 246 216 41 | ||||
CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 341 244 184 74 52 46 32 20 7 | ||||
TGCA | CviRI, HpyCH4V | 523 254 109 78 36 | ||||
CAC | HindI | 201 155 93 78 69 48 43 42 37 35 34 29 26 26 24 23 20 9 8 | ||||
TCNGA | Hpy188I | 217 202 164 135 134 71 39 38 | ||||
TTAA | MseI, Tru1I, Tru9I | 290 273 147 94 91 35 28 20 13 9 | ||||
GCSGC | TauI | 716 246 38 | ||||
Polymorphic_strain_digest | CCGC | AciI | 487 473 40 | |||
GCNGC | BthCI, Fnu4HI, Fsp4HI, ItaI, SatI | 252 246 245 216 41 | ||||
CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 585 184 74 52 46 32 20 7 | ||||
TGCA | CviRI, HpyCH4V | 559 254 109 78 | ||||
CAC | HindI | 201 155 93 78 71 69 48 43 42 35 29 26 26 24 23 20 8 5 4 | ||||
TCNGA | Hpy188I | 235 217 202 135 134 39 38 | ||||
TTAA | MseI, Tru1I, Tru9I | 364 290 147 94 35 28 20 13 9 | ||||
GCSGC | TauI | 471 246 245 38 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |