WormBase Tree Display for Variation: WBVar00121322

WBVar00121322 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121322
    Other_name: cbs56843
    HGVSg: chrX:g.9622493A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: tcttggaaaatgctggatctgaccatttgcaaccttataacactccctct gtacaggatcttcagaagacatttcaaatcaatatgattctgctgtagca
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: TGTACA AauI, Bsp1407I, BsrGI, SspBI 505 495
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 1000
        CTNAG BstDEI, DdeI 568 340 92
        RGCY CviJI, CviTI 216 177 172 160 116 99 32 28
        CAC HindI 232 188 91 84 73 65 61 57 56 34 17 13 13 11 3 2
        WGTACW TatI 505 495
      Polymorphic_strain_digest: TGTACA AauI, Bsp1407I, BsrGI, SspBI 1000
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 550 450
        CTNAG BstDEI, DdeI 568 432
        RGCY CviJI, CviTI 337 216 172 116 99 32 28
        CAC HindI 232 188 91 84 65 62 61 57 56 34 17 13 13 11 11 3 2
        WGTACW TatI 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00034940
    Transcript: CBG14447.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG14447.1:c.880T>G
        HGVSp: CBP09652.1:p.Cys294Gly
        cDNA_position: 885
        CDS_position: 880
        Protein_position: 294
        Exon_number: 4/4
        Codon_change: Tgt/Ggt
        Amino_acid_change: C/G
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP