WormBase Tree Display for Variation: WBVar00121375
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| WBVar00121375 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00121375 | ||||
| Other_name | cbs56896 | |||||
| cb56896 | Paper_evidence | WBPaper00055507 | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
| Flanking_sequences | gagttttgtcgaaagtgagaaaatt | ctgtgaggaagtgtgaaaacttcat | ||||
| Mapping_target | cb25.fpc3857a | |||||
| Type_of_mutation | Substitution | A | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 331 171 159 123 70 57 36 19 16 16 2 | ||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 589 369 42 | ||||
| CAC | HindI | 273 186 122 96 50 46 30 27 26 26 22 21 21 14 10 8 8 6 2 2 2 2 | ||||
| TTAA | MseI, Tru1I, Tru9I | 711 109 72 55 53 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 101 99 95 89 83 58 57 50 49 47 37 37 36 33 26 24 19 16 12 10 7 7 6 2 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 331 193 171 159 76 36 16 16 2 | |||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 958 42 | ||||
| CAC | HindI | 273 186 122 96 50 46 30 27 26 26 24 22 21 21 10 8 6 2 2 2 | ||||
| TTAA | MseI, Tru1I, Tru9I | 459 252 109 72 55 53 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 101 99 95 89 83 76 58 50 49 47 37 37 36 33 26 24 16 12 10 7 7 6 2 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 2 sequencing read(s) | ||||||
| Method | SNP |
