WormBase Tree Display for Variation: WBVar00121381

WBVar00121381 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00121381
    Other_name: cbs56902
      cb56902 Paper_evidence: WBPaper00055507
    HGVSg
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: aagtaaaaaaactctgggagaagcg caattatctaataagacgtataagc
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: A T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCGC AciI 469 182 161 105 60 23
        GCTAGC AsuNHI, BmtI, NheI 782 218
        CTAG BfaI, MaeI, XspI 612 217 96 51 24
        TCNGA Hpy188I 378 201 146 110 88 47 30
        GTNAC MaeIII 1000
        TTAA MseI, Tru1I, Tru9I 711 225 64
        GTSAC NmuCI, Tsp45I 1000
      Polymorphic_strain_digest: CCGC AciI 469 182 161 105 83
        GCTAGC AsuNHI, BmtI, NheI 1000
        CTAG BfaI, MaeI, XspI 829 96 51 24
        TCNGA Hpy188I 378 201 146 88 61 49 47 30
        GTNAC MaeIII 616 384
        TTAA MseI, Tru1I, Tru9I 706 225 64 5
        GTSAC NmuCI, Tsp45I 616 384
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00034958
    Transcript: CBG14482.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSp: CBP49366.1:p.Arg1582%3D
        cDNA_position: 4768
        CDS_position: 4746
        Protein_position: 1582
        Exon_number: 6/10
        Codon_change: cgA/cgT
        Amino_acid_change: R
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP