WormBase Tree Display for Variation: WBVar00121411

WBVar00121411 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121411
    Other_name: cbs56932
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: attggtaataaagatttttggaaaaaggacatcttaaaaaaggagccgga cctcggaacagatgctcacaagctgctatgaaatcatgccattgcactat
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 435 273 157 135
        CACNNNNGTG AleI, OliI 1000
        CTNAG BstDEI, DdeI 783 217
        RGCY CviJI, CviTI 447 106 77 73 61 57 42 33 30 28 22 11 7 6
        TCGA EsaBC3I, TaqI, TthHB8I 269 231 170 100 82 47 43 39 19
        CAC HindI 141 102 92 90 89 70 68 46 46 45 38 32 28 24 19 16 15 12 11 5 3 3 3 2
        CAYNNNNRTG MslI, SmiMI 606 394
        AATT Sse9I, TasI, Tsp509I, TspEI 435 157 135 135 69 69
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 592 273 135
        CACNNNNGTG AleI, OliI 729 271
        CTNAG BstDEI, DdeI 565 218 217
        RGCY CviJI, CviTI 447 106 77 73 61 57 42 33 30 28 28 11 7
        TCGA EsaBC3I, TaqI, TthHB8I 500 170 100 82 47 43 39 19
        CAC HindI 141 102 92 89 82 70 68 46 46 45 38 32 28 24 19 16 15 12 11 8 5 3 3 3 2
        CAYNNNNRTG MslI, SmiMI 394 335 271
        AATT Sse9I, TasI, Tsp509I, TspEI 592 135 135 69 69
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP