WormBase Tree Display for Variation: WBVar00121475

WBVar00121475 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121475
    Other_name: cbs56996
    HGVSg: chrX:g.10054032G>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: gaggggatctcgtcctggaagataccgttccatcggatactgaacggatt caaagtcgacgagttgatggctctcgcccttgtagacggcatcctcttct
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GAANNNNTTC Asp700I, MroXI, PdmI, XmnI 504 453 43
        CTRYAG BfmI, BstSFI, SfcI, SfeI 643 357
        CCNNGG BsaJI, BseDI, BssECI, SecI 955 45
        GATATC Eco32I, EcoRV 993 7
        GANTC HinfI 361 248 126 126 57 47 35
        TCCNGGA PfoI 468 307 225
        GAWTC TfiI 396 374 126 57 47
      Polymorphic_strain_digest: GAANNNNTTC Asp700I, MroXI, PdmI, XmnI 957 43
        CTRYAG BfmI, BstSFI, SfcI, SfeI 605 357 38
        CCNNGG BsaJI, BseDI, BssECI, SecI 488 467 45
        GATATC Eco32I, EcoRV 499 494 7
        GANTC HinfI 361 248 183 126 47 35
        TCCNGGA PfoI 775 225
        GAWTC TfiI 431 396 126 47
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00034992
    Transcript: CBG14528.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG14528.1:c.2111G>A
        HGVSp: CBP33395.1:p.Gly704Glu
        cDNA_position: 2128
        CDS_position: 2111
        Protein_position: 704
        Exon_number: 6/7
        Codon_change: gGa/gAa
        Amino_acid_change: G/E
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP