WormBase Tree Display for Variation: WBVar00121492
expand all nodes | collapse all nodes | view schema
| WBVar00121492 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00121492 | ||||
| Other_name | cbs57013 | |||||
| HGVSg | chrX:g.10123348T>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
| Flanking_sequences | gaagaaaaaactttcaagaaatgattgtgtgtctccgctctggaggattg | aagtgaaactaacaaaccttcagtgatagctccgtcgccatccgaatcga | ||||
| Mapping_target | cb25.fpc3857a | |||||
| Type_of_mutation | Substitution | A | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CCGC | AciI | 423 393 165 19 | ||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 429 393 178 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 429 393 178 | ||||
| GCNGC | BthCI, Fnu4HI, Fsp4HI, ItaI, SatI | 976 24 | ||||
| CAC | HindI | 153 104 96 66 66 51 51 46 40 33 28 27 27 25 24 24 21 20 20 16 14 11 11 9 7 2 2 2 2 2 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 537 290 173 | ||||
| GCSGC | TauI | 1000 | ||||
| Polymorphic_strain_digest | CCGC | AciI | 423 271 165 122 19 | |||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 571 429 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 571 429 | ||||
| GCNGC | BthCI, Fnu4HI, Fsp4HI, ItaI, SatI | 542 434 24 | ||||
| CAC | HindI | 153 104 96 66 66 51 51 46 45 40 33 28 27 27 24 24 21 20 16 14 11 11 9 7 2 2 2 2 2 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 827 173 | ||||
| GCSGC | TauI | 566 434 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00035003 | ||||
| Transcript | CBG14543a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG14543a.1:c.343+18T>C | |||||
| Intron_number | 4/5 | |||||
| CBG14543b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG14543b.1:c.298+18T>C | |||||
| Intron_number | 4/5 | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
