WormBase Tree Display for Variation: WBVar00121517

WBVar00121517 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00121517
    Other_name: cbs57038
      cb57038 Paper_evidence: WBPaper00055507
    HGVSg: chrX:g.10237189A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: aaccaaatcttgatttctctccccg aaccggcatggattgtcatgaagat
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCSGG AsuC2I, BcnI, CauII, EcoHI, NciI 1000
        CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 905 95
        CCNNGG BsaJI, BseDI, BssECI, SecI 1000
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 383 298 200 119
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 1000
        CCGG BsiSI, HapII, HpaII, MspI 503 261 236
      Polymorphic_strain_digest: CCSGG AsuC2I, BcnI, CauII, EcoHI, NciI 503 497
        CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 497 408 95
        CCNNGG BsaJI, BseDI, BssECI, SecI 505 495
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 382 298 200 120
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 501 499
        CCGG BsiSI, HapII, HpaII, MspI 497 261 236 6
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00035016
    Transcript: CBG14563.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14563.1:c.221-206A>C
        Intron_number: 2/4
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP