WormBase Tree Display for Variation: WBVar00122283

WBVar00122283 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00122283
    Other_name: cbs57804
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4010
    Flanking_sequences: tagaaaacaagaaggtcaagtgactctgaagcaaggttgcaattctgaga tttcaagaatagtcgtgaagtccaggcctttgtcggttatccgaatgtca
    Mapping_target: cb25.fpc4010
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 684 241 40 27 8
        YACGTR BsaAI, BstBAI 559 441
        TACGTA BstSNI, Eco105I, SnaBI 559 441
        TCGA EsaBC3I, TaqI, TthHB8I 580 316 104
        CAC HindI 164 122 98 78 58 58 53 48 46 42 42 40 40 38 28 28 7 6 4
        TCNGA Hpy188I 358 275 183 118 47 19
        ACGT HpyCH4IV, MaeII, TaiI, TscI 440 260 203 97
        GTNAC MaeIII 387 193 155 88 87 85 5
        TTAA MseI, Tru1I, Tru9I 209 206 166 83 66 58 55 47 47 45 12 6
        AATT Sse9I, TasI, Tsp509I, TspEI 240 178 130 129 77 75 34 34 32 30 27 8 6
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 497 241 187 40 27 8
        YACGTR BsaAI, BstBAI 1000
        TACGTA BstSNI, Eco105I, SnaBI 1000
        TCGA EsaBC3I, TaqI, TthHB8I 505 316 104 75
        CAC HindI 164 122 98 86 58 58 53 46 45 42 42 40 40 33 28 28 7 6 4
        TCNGA Hpy188I 358 275 230 118 19
        ACGT HpyCH4IV, MaeII, TaiI, TscI 700 203 97
        GTNAC MaeIII 387 198 155 88 87 85
        TTAA MseI, Tru1I, Tru9I 221 209 206 83 66 58 47 47 45 12 6
        AATT Sse9I, TasI, Tsp509I, TspEI 240 178 130 129 77 66 34 34 32 30 27 9 8 6
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP