WormBase Tree Display for Variation: WBVar00122335

WBVar00122335 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00122335
    Other_name: cbs57856
      cb57856 Paper_evidence: WBPaper00055507
    HGVSg: chrI:g.13606277A>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4022
    Flanking_sequences: gtcaacatttaaaggaactggaaaa atgatccaattccggttgccaaccg
    Mapping_target: cb25.fpc4022
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GRCGYC AcyI, BsaHI, BstACI, Hin1I, Hsp92I 540 460
        GRGCYC BanII, Eco24I, EcoT38I, FriOI, HgiJII 1000
        GDGCHC BmyI, Bsp1286I, MhlI, SduI 1000
        TCGA EsaBC3I, TaqI, TthHB8I 769 183 48
        GANTC HinfI 635 129 116 103 17
      Polymorphic_strain_digest: GRCGYC AcyI, BsaHI, BstACI, Hin1I, Hsp92I 1000
        GRGCYC BanII, Eco24I, EcoT38I, FriOI, HgiJII 614 386
        GDGCHC BmyI, Bsp1286I, MhlI, SduI 614 386
        TCGA EsaBC3I, TaqI, TthHB8I 391 378 183 48
        GANTC HinfI 460 175 129 116 103 17
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00035662
    Transcript: CBG15365.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG15365.1:c.400A>G
        HGVSp: CBP45398.1:p.Asn134Asp
        cDNA_position: 528
        CDS_position: 400
        Protein_position: 134
        Exon_number: 3/5
        Codon_change: Aat/Gat
        Amino_acid_change: N/D
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP