WormBase Tree Display for Variation: WBVar00127103

WBVar00127103 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00127103
    Other_name: cbs62624
    HGVSg: chrV:g.12289356G>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4126
    Flanking_sequences: gaaaacgagggcttgttttggccagtgatcatccgatcgtcgaagttcaa cgattcagaatggttggttttttttaaaccagaattaggtgttgtacttt
    Mapping_target: cb25.fpc4126
    Type_of_mutation: Substitution: G C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GGATCC BamHI 1000
        ATGCAT BfrBI, EcoT22I, Mph1103I, NsiI, Ppu10I, Zsp2I 826 174
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 475 214 172 69 62 8
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 609 391
        RGATCY BstX2I, BstYI, MflI, PsuI, XhoII 938 62
        CATG CviAII, FatI, HpyCH4I, Hsp92II, NlaIII 425 311 97 79 51 32 5
        RGCY CviJI, CviTI 176 170 150 131 128 114 96 25 10
        TGCA CviRI, HpyCH4V 324 267 174 141 94
        CAC HindI 129 102 99 83 79 78 65 56 56 43 35 34 29 23 21 14 13 12 12 10 5 2
        ACGT HpyCH4IV, MaeII, TaiI, TscI 1000
      Polymorphic_strain_digest: GGATCC BamHI 822 178
        ATGCAT BfrBI, EcoT22I, Mph1103I, NsiI, Ppu10I, Zsp2I 1000
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 475 172 116 98 69 62 8
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 609 215 166 10
        RGATCY BstX2I, BstYI, MflI, PsuI, XhoII 822 116 62
        CATG CviAII, FatI, HpyCH4I, Hsp92II, NlaIII 425 311 176 51 32 5
        RGCY CviJI, CviTI 176 170 150 131 128 114 81 25 15 10
        TGCA CviRI, HpyCH4V 324 315 267 94
        CAC HindI 129 100 99 83 79 78 65 56 56 43 35 34 29 23 21 14 13 12 12 10 5 2 2
        ACGT HpyCH4IV, MaeII, TaiI, TscI 804 196
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00270736
    Transcript: CBG30682.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG30682.1:c.100G>C
        HGVSp: CBP45832.1:p.Ala34Pro
        cDNA_position: 100
        CDS_position: 100
        Protein_position: 34
        Exon_number: 2/6
        Codon_change: Gcg/Ccg
        Amino_acid_change: A/P
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP