WormBase Tree Display for Variation: WBVar00127197

WBVar00127197 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00127197
    Other_name: cbs62718
    HGVSg: chrV:g.12715304T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4126
    Flanking_sequences: tgggtacatgtcagtcattttgatgtctgagctttctcttatctacaatt caggtgtgggggattcatgatcatgtgttgtttcattcttctgctcacaa
    Mapping_target: cb25.fpc4126
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 528 354 118
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 1000
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 528 354 118
        CTNAG BstDEI, DdeI 524 247 229
      Polymorphic_strain_digest: CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 381 354 147 118
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 500 500
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 381 354 147 118
        CTNAG BstDEI, DdeI 771 229
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00270713
    Transcript: CBG30659a.1 VEP_consequence: splice_region_variant,intron_variant
        VEP_impact: LOW
        HGVSc: CBG30659a.1:c.567-4T>C
        Intron_number: 6/7
      CBG30659b.1 VEP_consequence: splice_region_variant,intron_variant
        VEP_impact: LOW
        HGVSc: CBG30659b.1:c.561-4T>C
        Intron_number: 5/5
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP