WormBase Tree Display for Variation: WBVar00127302
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| WBVar00127302 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00127302 | ||||
| Other_name | cbs62823 | |||||
| HGVSg | chrV:g.13165153T>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4126 | ||
| Flanking_sequences | cacaaaatgttctctctcacattcttcataatcccaatcatagtgctgct | ggttttcttgtttttctcataaactcctttatcctgtcttgcaaatctgt | ||||
| Mapping_target | cb25.fpc4126 | |||||
| Type_of_mutation | Substitution | T | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 568 246 186 | ||
| CCSGG | AsuC2I, BcnI, CauII, EcoHI, NciI | 1000 | ||||
| CCNGG | Bme1390I, BssKI, BstSCI, MspR9I, ScrFI | 591 379 16 14 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 873 99 28 | ||||
| CCGG | BsiSI, HapII, HpaII, MspI | 719 281 | ||||
| GCNNNNNNNGC | BstMWI, HpyF10VI, MwoI | 512 329 159 | ||||
| GANTC | HinfI | 349 243 218 126 64 | ||||
| TTAA | MseI, Tru1I, Tru9I | 629 354 12 5 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 211 179 114 71 67 59 56 55 47 45 35 31 16 14 | ||||
| GAWTC | TfiI | 587 349 64 | ||||
| Polymorphic_strain_digest | GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 754 246 | |||
| CCSGG | AsuC2I, BcnI, CauII, EcoHI, NciI | 501 499 | ||||
| CCNGG | Bme1390I, BssKI, BstSCI, MspR9I, ScrFI | 499 379 92 16 14 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 644 229 99 28 | ||||
| CCGG | BsiSI, HapII, HpaII, MspI | 502 281 217 | ||||
| GCNNNNNNNGC | BstMWI, HpyF10VI, MwoI | 841 159 | ||||
| GANTC | HinfI | 349 228 218 126 64 15 | ||||
| TTAA | MseI, Tru1I, Tru9I | 440 354 189 12 5 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 179 159 114 71 67 59 56 55 52 47 45 35 31 16 14 | ||||
| GAWTC | TfiI | 572 349 64 15 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00270689 | ||||
| Transcript | CBG30635.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG30635.1:c.484A>C | |||||
| HGVSp | CBP44777.1:p.Lys162Gln | |||||
| cDNA_position | 651 | |||||
| CDS_position | 484 | |||||
| Protein_position | 162 | |||||
| Exon_number | 5/9 | |||||
| Codon_change | Aag/Cag | |||||
| Amino_acid_change | K/Q | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
