WormBase Tree Display for Variation: WBVar00127322

WBVar00127322 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00127322
    Other_name: cbs62843
    HGVSg: chrV:g.13349909G>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4126
    Flanking_sequences: ggaatccgaatgggtgcatatgagcaaattcgtctattaacctttgataa gatgtaggttcaaataaatgtttttaatctggagatgttttttgtagaaa
    Mapping_target: cb25.fpc4126
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CATATG FauNDI, NdeI 533 368 99
        TCNNGA Hpy178III, Hpy188III 403 226 109 101 68 67 18 8
        ACGT HpyCH4IV, MaeII, TaiI, TscI 557 443
      Polymorphic_strain_digest: CATATG FauNDI, NdeI 533 467
        TCNNGA Hpy178III, Hpy188III 403 226 169 109 67 18 8
        ACGT HpyCH4IV, MaeII, TaiI, TscI 443 366 191
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00038509
    Transcript: CBG19253.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG19253.1:c.333G>A
        HGVSp: CBP32525.1:p.Lys111%3D
        cDNA_position: 333
        CDS_position: 333
        Protein_position: 111
        Exon_number: 3/7
        Codon_change: aaG/aaA
        Amino_acid_change: K
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP