WormBase Tree Display for Variation: WBVar00127358
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WBVar00127358 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00127358 | ||||
Other_name | cbs62879 | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc4126 | ||
Flanking_sequences | ctgggtaaaacattttttattattatgctggtatgtaaaaatcgtagctg | gaaagagaaacgccgatggccgtagctgaaggtcccacagcgaaaactac | ||||
Mapping_target | cb25.fpc4126 | |||||
Type_of_mutation | Substitution | T | G | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 756 244 | ||
CCGC | AciI | 754 246 | ||||
CCSGG | AsuC2I, BcnI, CauII, EcoHI, NciI | 684 316 | ||||
CCNGG | Bme1390I, BssKI, BstSCI, MspR9I, ScrFI | 450 316 234 | ||||
CCGG | BsiSI, HapII, HpaII, MspI | 403 317 178 102 | ||||
CAC | HindI | 150 111 102 82 68 58 56 38 38 37 36 28 28 23 21 18 17 16 13 12 11 10 9 8 6 4 | ||||
TCCNGGA | PfoI | 682 318 | ||||
Polymorphic_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 685 244 71 | |||
CCGC | AciI | 683 246 71 | ||||
CCSGG | AsuC2I, BcnI, CauII, EcoHI, NciI | 1000 | ||||
CCNGG | Bme1390I, BssKI, BstSCI, MspR9I, ScrFI | 550 450 | ||||
CCGG | BsiSI, HapII, HpaII, MspI | 720 178 102 | ||||
CAC | HindI | 150 118 111 102 68 58 56 38 38 37 28 28 23 21 18 17 16 13 12 11 10 9 8 6 4 | ||||
TCCNGGA | PfoI | 1000 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |