WormBase Tree Display for Variation: WBVar00127376

WBVar00127376 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00127376
    Other_name: cbs62897
    HGVSg: chrV:g.13600295G>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4126
    Flanking_sequences: tttatcttattgactggtactgtaggttatgtgatttcaaaaaacttgca acttgcattctagaaattttcggaaaacttttaaagaattgttaggtttt
    Mapping_target: cb25.fpc4126
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 310 176 166 158 121 41 21 7
        CTAG BfaI, MaeI, XspI 490 275 235
        TGCA CviRI, HpyCH4V 405 359 132 90 8 6
        TCGA EsaBC3I, TaqI, TthHB8I 460 153 142 129 94 22
        TCNNGA Hpy178III, Hpy188III 385 131 131 118 95 50 41 22 20 7
        TCNGA Hpy188I 478 183 157 97 85
        TTAA MseI, Tru1I, Tru9I 496 236 133 100 35
        AATT Sse9I, TasI, Tsp509I, TspEI 206 166 129 121 104 81 77 35 25 22 21 7 6
        TCTAGA XbaI 509 491
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 310 167 158 133 121 42 41 21 7
        CTAG BfaI, MaeI, XspI 725 275
        TGCA CviRI, HpyCH4V 495 367 132 6
        TCGA EsaBC3I, TaqI, TthHB8I 602 153 129 94 22
        TCNNGA Hpy178III, Hpy188III 385 131 131 129 84 50 41 22 20 7
        TCNGA Hpy188I 635 183 97 85
        TTAA MseI, Tru1I, Tru9I 496 236 104 100 35 29
        AATT Sse9I, TasI, Tsp509I, TspEI 206 167 121 108 104 81 77 35 25 21 21 21 7 6
        TCTAGA XbaI 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00038559
    Transcript: CBG19314.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG19314.1:c.199-889G>A
        Intron_number: 2/2
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP