WormBase Tree Display for Variation: WBVar00127386

WBVar00127386 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00127386
    Other_name: cbs62907
    HGVSg: chrV:g.13600465T>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4126
    Flanking_sequences: ccaatgaggatctccctaaaggatctccggaactttctcccttcttaatt gtgacaccatcaaaaaaagaaatttcgagacaagtacaatagtctctcga
    Mapping_target: cb25.fpc4126
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 379 176 166 109 60 41 41 21 7
        CTAG BfaI, MaeI, XspI 660 235 105
        TGCA CviRI, HpyCH4V 575 327 90 8
        TCGA EsaBC3I, TaqI, TthHB8I 384 154 153 142 138 22 7
        TCNNGA Hpy178III, Hpy188III 301 215 131 118 95 50 41 22 20 7
        TCNGA Hpy188I 648 157 98 97
        TTAA MseI, Tru1I, Tru9I 361 270 236 133
        AATT Sse9I, TasI, Tsp509I, TspEI 206 166 129 109 102 71 60 41 35 25 22 21 7 6
        TCTAGA XbaI 661 339
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 379 167 133 109 60 42 41 41 21 7
        CTAG BfaI, MaeI, XspI 895 105
        TGCA CviRI, HpyCH4V 665 335
        TCGA EsaBC3I, TaqI, TthHB8I 526 154 153 138 22 7
        TCNNGA Hpy178III, Hpy188III 301 215 131 129 84 50 41 22 20 7
        TCNGA Hpy188I 805 98 97
        TTAA MseI, Tru1I, Tru9I 361 270 236 104 29
        AATT Sse9I, TasI, Tsp509I, TspEI 206 167 109 108 102 71 60 41 35 25 21 21 21 7 6
        TCTAGA XbaI 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00038559
    Transcript: CBG19314.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG19314.1:c.199-719T>G
        Intron_number: 2/2
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP