WormBase Tree Display for Variation: WBVar00142921
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| WBVar00142921 | Name | Public_name | e27 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence_details | SeqStatus | Pending_curation | |||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00004082 | ||||||||
| WBStrain00026883 | |||||||||
| WBStrain00026995 | |||||||||
| WBStrain00026996 | |||||||||
| WBStrain00029947 | |||||||||
| WBStrain00031247 | |||||||||
| WBStrain00034227 | |||||||||
| WBStrain00034256 | |||||||||
| WBStrain00034334 | |||||||||
| WBStrain00034337 | |||||||||
| WBStrain00035128 | |||||||||
| WBStrain00035131 | |||||||||
| WBStrain00035133 | |||||||||
| Laboratory | CB | ||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00001065 | |||||||
| Interactor | WBInteraction000501355 | ||||||||
| WBInteraction000501361 | |||||||||
| WBInteraction000501367 | |||||||||
| WBInteraction000519147 | |||||||||
| WBInteraction000519159 | |||||||||
| WBInteraction000537306 | |||||||||
| WBInteraction000571293 | |||||||||
| WBInteraction000571294 | |||||||||
| WBInteraction000571571 | |||||||||
| Genetics | Mapping_data | In_2_point | 143 | ||||||
| 145 | |||||||||
| 146 | |||||||||
| 147 | |||||||||
| 148 | |||||||||
| 149 | |||||||||
| 150 | |||||||||
| 151 | |||||||||
| 152 | |||||||||
| 395 | |||||||||
| 398 | |||||||||
| 400 | |||||||||
| 413 | |||||||||
| 625 | |||||||||
| 627 | |||||||||
| 1820 | |||||||||
| 3178 | |||||||||
| 3936 | |||||||||
| 5218 | |||||||||
| 6073 | |||||||||
| 6175 | |||||||||
| In_multi_point | 313 | ||||||||
| 353 | |||||||||
| 354 | |||||||||
| 358 | |||||||||
| 394 | |||||||||
| 532 | |||||||||
| 536 | |||||||||
| 622 | |||||||||
| 741 | |||||||||
| 749 | |||||||||
| 790 | |||||||||
| 794 | |||||||||
| 879 | |||||||||
| 916 | |||||||||
| 1143 | |||||||||
| 1208 | |||||||||
| 1210 | |||||||||
| 1548 | |||||||||
| 1549 | |||||||||
| 1772 | |||||||||
| 1773 | |||||||||
| 1777 | |||||||||
| 1778 | |||||||||
| 1779 | |||||||||
| 1780 | |||||||||
| 1845 | |||||||||
| 2047 | |||||||||
| 2313 | |||||||||
| 2344 | |||||||||
| 2429 | |||||||||
| 2430 | |||||||||
| 2810 | |||||||||
| 5464 | |||||||||
| In_pos_neg_data | 1864 | ||||||||
| 1869 | |||||||||
| 1883 | |||||||||
| 1907 | |||||||||
| 1923 | |||||||||
| 1939 | |||||||||
| 1955 | |||||||||
| 1971 | |||||||||
| 1987 | |||||||||
| 2024 | |||||||||
| 2037 | |||||||||
| 2053 | |||||||||
| 2060 | |||||||||
| 2158 | |||||||||
| 3752 | |||||||||
| 5045 | |||||||||
| 5055 | |||||||||
| Description | Phenotype | WBPhenotype:0000583 | Paper_evidence | WBPaper00000031 | |||||
| WBPaper00000465 | |||||||||
| WBPaper00005747 | |||||||||
| Person_evidence | WBPerson261 | ||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson712 | |||||||||
| WBPerson2987 | |||||||||
| Remark | Dumpy as L3 and L4, stronger dumpy as adult, weak/mild dumpy as Dauer. | Paper_evidence | WBPaper00000465 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| medium dumpy; L1 non-dumpy. | Person_evidence | WBPerson261 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Authors report "medium dpy" (Table 1) | Paper_evidence | WBPaper00005747 | |||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Recessive | Paper_evidence | WBPaper00000465 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| EQ_annotations | Life_stage | WBls:0000035 | PATO:0000460 | Paper_evidence | WBPaper00000465 | ||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBls:0000038 | PATO:0000460 | Paper_evidence | WBPaper00000465 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00000465 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBls:0000032 | PATO:0000460 | Paper_evidence | WBPaper00000465 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Phenotype_assay | Temperature | 16C, 25C | Paper_evidence | WBPaper00000465 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| Genotype | kaIs12 [col-19::gfp] | Paper_evidence | WBPaper00005747 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Ease_of_scoring | ES3_Easy_to_score | Person_evidence | WBPerson261 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0000961 | Paper_evidence | WBPaper00005747 | |||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Remark | Table 1 | Paper_evidence | WBPaper00005747 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Phenotype_assay | Genotype | kaIs12 [col-19::gfp] | Paper_evidence | WBPaper00005747 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| WBPhenotype:0001236 | Paper_evidence | WBPaper00053771 | |||||||
| Curator_confirmed | WBPerson499 | ||||||||
| Remark | dpy-3(e27) induces expression of nlp-29p::GFP (Figure S4C) | Paper_evidence | WBPaper00053771 | ||||||
| Curator_confirmed | WBPerson499 | ||||||||
| Phenotype_assay | Genotype | frIs7 [nlp-29p::gfp, col-12p::DsRed] | Paper_evidence | WBPaper00053771 | |||||
| Curator_confirmed | WBPerson499 | ||||||||
| WBPhenotype:0001412 | Paper_evidence | WBPaper00005747 | |||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Remark | Authors report "multiple or discontinuous ala" (Table 1) | Paper_evidence | WBPaper00005747 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Phenotype_assay | Genotype | kaIs12 [col-19::gfp] | Paper_evidence | WBPaper00005747 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| WBPhenotype:0001515 | Paper_evidence | WBPaper00000465 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | Struts are missing and any remaining struts are randomly arranged. | Paper_evidence | WBPaper00000465 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Recessive | Paper_evidence | WBPaper00000465 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| EQ_annotations | Life_stage | WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00000465 | ||||
| Curator_confirmed | WBPerson712 | ||||||||
| Phenotype_assay | Temperature | 25C | Paper_evidence | WBPaper00000465 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0001517 | Paper_evidence | WBPaper00000465 | |||||||
| WBPaper00005747 | |||||||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPerson2987 | |||||||||
| Remark | Annulae are severely effected; only smooth or rough surfaces are present. | Paper_evidence | WBPaper00000465 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Authors report "missing or amorphous annuli" (Table 1) | Paper_evidence | WBPaper00005747 | |||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Recessive | Paper_evidence | WBPaper00000465 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| EQ_annotations | Life_stage | WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00000465 | ||||
| Curator_confirmed | WBPerson712 | ||||||||
| Phenotype_assay | Temperature | 25C | Paper_evidence | WBPaper00000465 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| Genotype | kaIs12 [col-19::gfp] | Paper_evidence | WBPaper00005747 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| WBPhenotype:0002539 | Paper_evidence | WBPaper00053771 | |||||||
| Curator_confirmed | WBPerson499 | ||||||||
| Remark | dpy-3(e27) induces expression of nlp-29p::GFP (Figure S4C) | Paper_evidence | WBPaper00053771 | ||||||
| Curator_confirmed | WBPerson499 | ||||||||
| Phenotype_assay | Genotype | frIs7 [nlp-29p::gfp, col-12p::DsRed] | Paper_evidence | WBPaper00053771 | |||||
| Curator_confirmed | WBPerson499 | ||||||||
| Phenotype_not_observed | WBPhenotype:0000505 | Paper_evidence | WBPaper00001328 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | Males are not Ram. | Paper_evidence | WBPaper00001328 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0006941 | PATO:0000460 | Paper_evidence | WBPaper00001328 | ||||
| Curator_confirmed | WBPerson712 | ||||||||
| Life_stage | WBls:0000056 | PATO:0000460 | Paper_evidence | WBPaper00001328 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| Phenotype_assay | Temperature | 20C | Paper_evidence | WBPaper00001328 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| Genotype | him-5(e1490) | Paper_evidence | WBPaper00001328 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0000645 | Paper_evidence | WBPaper00000465 | |||||||
| Person_evidence | WBPerson261 | ||||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | non-roller | Person_evidence | WBPerson261 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| EQ_annotations | Life_stage | WBls:0000002 | PATO:0000460 | Paper_evidence | WBPaper00000465 | ||||
| Curator_confirmed | WBPerson712 | ||||||||
| Phenotype_assay | Temperature | 16C, 25C | Paper_evidence | WBPaper00000465 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0001412 | Paper_evidence | WBPaper00000465 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| EQ_annotations | Life_stage | WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00000465 | ||||
| Curator_confirmed | WBPerson712 | ||||||||
| Phenotype_assay | Temperature | 25C | Paper_evidence | WBPaper00000465 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0001516 | Paper_evidence | WBPaper00000465 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| EQ_annotations | Life_stage | WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00000465 | ||||
| Curator_confirmed | WBPerson712 | ||||||||
| Phenotype_assay | Temperature | 25C | Paper_evidence | WBPaper00000465 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0001732 | Paper_evidence | WBPaper00032033 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | Animals exhibited the same pH survival profile as the wild-type strain over a range of pH 3 to pH 10. | Paper_evidence | WBPaper00032033 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Phenotype_assay | Treatment | Mixed or synchronised populations of nematodes were exposed to 500ul M9 buffer (100 mM phosphate, 85 mM NaCl, 1 mM MgSO4 buffered at the appropriate pH by varying KH2PO4 and Na2HPO4 concentrations accordingly) at varying pHs in a 24-well plate format for 4 h (200 nematodes/well). Nematodes were scored as viable by the presence of touch response and pharyngeal pumping. | Paper_evidence | WBPaper00032033 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| Reference | WBPaper00001328 | ||||||||
| WBPaper00000031 | |||||||||
| WBPaper00005747 | |||||||||
| WBPaper00000465 | |||||||||
| WBPaper00032033 | |||||||||
| WBPaper00053771 | |||||||||
| WBPaper00065103 | |||||||||
| Method | Allele |
