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WormBase Tree Display for Variation: WBVar00142966

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Name Class

WBVar00142966EvidencePaper_evidenceWBPaper00005014
NamePublic_namee109
Other_nameZK1098.10a.2:c.549-152_670+174del
ZK1098.10e.1:c.657-152_778+174del
ZK1098.10h.1:c.657-152_778+174del
ZK1098.10b.1:c.657-152_778+174del
ZK1098.10j.1:c.549-152_670+174del
ZK1098.10d.1:c.657-152_778+174del
ZK1098.10i.1:c.657-152_778+174del
ZK1098.10n.1:c.657-152_778+174del
ZK1098.10m.1:c.714-152_835+174del
ZK1098.10a.1:c.549-152_670+174del
ZK1098.10l.1:c.657-152_778+174del
HGVSgCHROMOSOME_III:g.9548414_9548861del
Sequence_detailsSMapS_parentSequenceZK1098
Flanking_sequencesttattgtttaaaaaaattgtataaattcgcggcacgggttttcgcaaccgccgcgcgttt
Mapping_targetZK1098
Type_of_mutationDeletion
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004103
LaboratoryCB
StatusLive
AffectsGeneWBGene00006755
TranscriptZK1098.10j.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScZK1098.10j.1:c.549-152_670+174del
Intron_number3-4/12
Exon_number4/13
ZK1098.10b.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScZK1098.10b.1:c.657-152_778+174del
Intron_number5-6/21
Exon_number6/22
ZK1098.10a.2VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScZK1098.10a.2:c.549-152_670+174del
Intron_number4-5/22
Exon_number5/23
ZK1098.10h.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScZK1098.10h.1:c.657-152_778+174del
Intron_number4-5/12
Exon_number5/13
ZK1098.10l.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScZK1098.10l.1:c.657-152_778+174del
Intron_number4-5/11
Exon_number5/12
ZK1098.10i.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScZK1098.10i.1:c.657-152_778+174del
Intron_number5-6/13
Exon_number6/14
ZK1098.10a.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScZK1098.10a.1:c.549-152_670+174del
Intron_number5-6/23
Exon_number6/24
ZK1098.10f.1VEP_consequencesplice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
Intron_number1/15
Exon_number1/16
ZK1098.10e.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScZK1098.10e.1:c.657-152_778+174del
Intron_number5-6/22
Exon_number6/23
ZK1098.10n.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScZK1098.10n.1:c.657-152_778+174del
Intron_number4-5/12
Exon_number5/13
ZK1098.10m.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScZK1098.10m.1:c.714-152_835+174del
Intron_number5-6/14
Exon_number6/15
ZK1098.10k.1VEP_consequencesplice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
Intron_number1/9
Exon_number1/10
ZK1098.10d.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScZK1098.10d.1:c.657-152_778+174del
Intron_number5-6/22
Exon_number6/23
InteractorWBInteraction000501732
WBInteraction000501733
WBInteraction000501736
WBInteraction000502019
GeneticsInterpolated_map_positionIII0.584279
Mapping_dataIn_2_point54
83
In_multi_point79
379
1421
1506
1507
1508
1668
1736
1810
1811
1817
1835
3267
DescriptionPhenotypeWBPhenotype:0000209Paper_evidenceWBPaper00002315
Curator_confirmedWBPerson712
RemarkAnimals exhibited moderately short defecation cycles at 25C but wild-type mean cycle times at 20C.Paper_evidenceWBPaper00002315
Curator_confirmedWBPerson712
RecessivePaper_evidenceWBPaper00002315
Curator_confirmedWBPerson712
Temperature_sensitiveHeat_sensitive25Paper_evidenceWBPaper00002315
Curator_confirmedWBPerson712
Phenotype_assayTemperature20, 25Paper_evidenceWBPaper00002315
Curator_confirmedWBPerson712
WBPhenotype:0000229Person_evidenceWBPerson261
Curator_confirmedWBPerson712
RemarksmallPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000324Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0000542Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0000641Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarkmales more activePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
Ease_of_scoringES3_Easy_to_scorePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000643Paper_evidenceWBPaper00000031
Curator_confirmedWBPerson48
WBPhenotype:0000646Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarkvery sluggishPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0001309Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0001639Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0001791Paper_evidenceWBPaper00002315
Curator_confirmedWBPerson712
RemarkAnimals exhibited significantly different defecation cycles at 20C from that at 25C.Paper_evidenceWBPaper00002315
Curator_confirmedWBPerson712
RecessivePaper_evidenceWBPaper00002315
Curator_confirmedWBPerson712
Temperature_sensitiveHeat_sensitive25Paper_evidenceWBPaper00002315
Curator_confirmedWBPerson712
Phenotype_assayTemperature20, 25Paper_evidenceWBPaper00002315
Curator_confirmedWBPerson712
WBPhenotype:0002039Paper_evidenceWBPaper00038128
Curator_confirmedWBPerson1068
RemarkDefect of retrograde transport of APL-1 proteinPaper_evidenceWBPaper00038128
Curator_confirmedWBPerson1068
WBPhenotype:0002284Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002288Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002291Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002295Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002299Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002301Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002310Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002312Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002321Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002323Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002336Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002344Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002347Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002477Paper_evidenceWBPaper00052855
Curator_confirmedWBPerson15276
EQ_annotationsGO_termGO:0005840PATO:0000460Paper_evidenceWBPaper00052855
Curator_confirmedWBPerson15276
WBPhenotype:0004023Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
Phenotype_not_observedWBPhenotype:0000039Paper_evidenceWBPaper00025132
Curator_confirmedWBPerson712
Remarkmutants show little effect on lifespanPaper_evidenceWBPaper00025132
Curator_confirmedWBPerson712
WBPhenotype:0000679Paper_evidenceWBPaper00028448
Curator_confirmedWBPerson712
RemarkPKD-2::GFP localization is not different from wild type.Paper_evidenceWBPaper00028448
Curator_confirmedWBPerson712
ReferenceWBPaper00038128
WBPaper00043908
WBPaper00025132
WBPaper00028448
WBPaper00000031
WBPaper00023027
WBPaper00002315
WBPaper00016876
WBPaper00010139
WBPaper00052855
MethodDeletion_allele