WormBase Tree Display for Variation: WBVar00142966
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WBVar00142966 | Evidence | Paper_evidence | WBPaper00005014 | ||||||
---|---|---|---|---|---|---|---|---|---|
Name | Public_name | e109 | |||||||
Other_name | ZK1098.10a.2:c.549-152_670+174del | ||||||||
ZK1098.10e.1:c.657-152_778+174del | |||||||||
ZK1098.10h.1:c.657-152_778+174del | |||||||||
ZK1098.10b.1:c.657-152_778+174del | |||||||||
ZK1098.10j.1:c.549-152_670+174del | |||||||||
ZK1098.10d.1:c.657-152_778+174del | |||||||||
ZK1098.10i.1:c.657-152_778+174del | |||||||||
ZK1098.10n.1:c.657-152_778+174del | |||||||||
ZK1098.10m.1:c.714-152_835+174del | |||||||||
ZK1098.10a.1:c.549-152_670+174del | |||||||||
ZK1098.10l.1:c.657-152_778+174del | |||||||||
HGVSg | CHROMOSOME_III:g.9548414_9548861del | ||||||||
Sequence_details | SMap | S_parent | Sequence | ZK1098 | |||||
Flanking_sequences | ttattgtttaaaaaaattgtataaattcgc | ggcacgggttttcgcaaccgccgcgcgttt | |||||||
Mapping_target | ZK1098 | ||||||||
Type_of_mutation | Deletion | ||||||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00004103 | ||||||||
Laboratory | CB | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00006755 | |||||||
Transcript | ZK1098.10j.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | ||||||||
HGVSc | ZK1098.10j.1:c.549-152_670+174del | ||||||||
Intron_number | 3-4/12 | ||||||||
Exon_number | 4/13 | ||||||||
ZK1098.10b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | ZK1098.10b.1:c.657-152_778+174del | ||||||||
Intron_number | 5-6/21 | ||||||||
Exon_number | 6/22 | ||||||||
ZK1098.10a.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | ZK1098.10a.2:c.549-152_670+174del | ||||||||
Intron_number | 4-5/22 | ||||||||
Exon_number | 5/23 | ||||||||
ZK1098.10h.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | ZK1098.10h.1:c.657-152_778+174del | ||||||||
Intron_number | 4-5/12 | ||||||||
Exon_number | 5/13 | ||||||||
ZK1098.10l.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | ZK1098.10l.1:c.657-152_778+174del | ||||||||
Intron_number | 4-5/11 | ||||||||
Exon_number | 5/12 | ||||||||
ZK1098.10i.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | ZK1098.10i.1:c.657-152_778+174del | ||||||||
Intron_number | 5-6/13 | ||||||||
Exon_number | 6/14 | ||||||||
ZK1098.10a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | ZK1098.10a.1:c.549-152_670+174del | ||||||||
Intron_number | 5-6/23 | ||||||||
Exon_number | 6/24 | ||||||||
ZK1098.10f.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
Intron_number | 1/15 | ||||||||
Exon_number | 1/16 | ||||||||
ZK1098.10e.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | ZK1098.10e.1:c.657-152_778+174del | ||||||||
Intron_number | 5-6/22 | ||||||||
Exon_number | 6/23 | ||||||||
ZK1098.10n.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | ZK1098.10n.1:c.657-152_778+174del | ||||||||
Intron_number | 4-5/12 | ||||||||
Exon_number | 5/13 | ||||||||
ZK1098.10m.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | ZK1098.10m.1:c.714-152_835+174del | ||||||||
Intron_number | 5-6/14 | ||||||||
Exon_number | 6/15 | ||||||||
ZK1098.10k.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
Intron_number | 1/9 | ||||||||
Exon_number | 1/10 | ||||||||
ZK1098.10d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | ZK1098.10d.1:c.657-152_778+174del | ||||||||
Intron_number | 5-6/22 | ||||||||
Exon_number | 6/23 | ||||||||
Interactor | WBInteraction000501732 | ||||||||
WBInteraction000501733 | |||||||||
WBInteraction000501736 | |||||||||
WBInteraction000502019 | |||||||||
Genetics | Interpolated_map_position | III | 0.584279 | ||||||
Mapping_data | In_2_point | 54 | |||||||
83 | |||||||||
In_multi_point | 79 | ||||||||
379 | |||||||||
1421 | |||||||||
1506 | |||||||||
1507 | |||||||||
1508 | |||||||||
1668 | |||||||||
1736 | |||||||||
1810 | |||||||||
1811 | |||||||||
1817 | |||||||||
1835 | |||||||||
3267 | |||||||||
Description | Phenotype | WBPhenotype:0000209 | Paper_evidence | WBPaper00002315 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Animals exhibited moderately short defecation cycles at 25C but wild-type mean cycle times at 20C. | Paper_evidence | WBPaper00002315 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Recessive | Paper_evidence | WBPaper00002315 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Temperature_sensitive | Heat_sensitive | 25 | Paper_evidence | WBPaper00002315 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Temperature | 20, 25 | Paper_evidence | WBPaper00002315 | |||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000229 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | small | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000324 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0000542 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0000641 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | males more active | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Ease_of_scoring | ES3_Easy_to_score | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000643 | Paper_evidence | WBPaper00000031 | |||||||
Curator_confirmed | WBPerson48 | ||||||||
WBPhenotype:0000646 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | very sluggish | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001309 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0001639 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0001791 | Paper_evidence | WBPaper00002315 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Animals exhibited significantly different defecation cycles at 20C from that at 25C. | Paper_evidence | WBPaper00002315 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Recessive | Paper_evidence | WBPaper00002315 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Temperature_sensitive | Heat_sensitive | 25 | Paper_evidence | WBPaper00002315 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Temperature | 20, 25 | Paper_evidence | WBPaper00002315 | |||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0002039 | Paper_evidence | WBPaper00038128 | |||||||
Curator_confirmed | WBPerson1068 | ||||||||
Remark | Defect of retrograde transport of APL-1 protein | Paper_evidence | WBPaper00038128 | ||||||
Curator_confirmed | WBPerson1068 | ||||||||
WBPhenotype:0002284 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0002288 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0002291 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0002295 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0002299 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0002301 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0002310 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0002312 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0002321 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0002323 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0002336 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0002344 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0002347 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0002477 | Paper_evidence | WBPaper00052855 | |||||||
Curator_confirmed | WBPerson15276 | ||||||||
EQ_annotations | GO_term | GO:0005840 | PATO:0000460 | Paper_evidence | WBPaper00052855 | ||||
Curator_confirmed | WBPerson15276 | ||||||||
WBPhenotype:0004023 | Paper_evidence | WBPaper00043908 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
Phenotype_not_observed | WBPhenotype:0000039 | Paper_evidence | WBPaper00025132 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | mutants show little effect on lifespan | Paper_evidence | WBPaper00025132 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000679 | Paper_evidence | WBPaper00028448 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | PKD-2::GFP localization is not different from wild type. | Paper_evidence | WBPaper00028448 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Reference | WBPaper00038128 | ||||||||
WBPaper00043908 | |||||||||
WBPaper00025132 | |||||||||
WBPaper00028448 | |||||||||
WBPaper00000031 | |||||||||
WBPaper00023027 | |||||||||
WBPaper00002315 | |||||||||
WBPaper00016876 | |||||||||
WBPaper00010139 | |||||||||
WBPaper00052855 | |||||||||
Method | Deletion_allele |