WormBase Tree Display for Variation: WBVar00143022
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WBVar00143022 | Evidence | Paper_evidence | WBPaper00027121 | |||||
---|---|---|---|---|---|---|---|---|
Name (3) | ||||||||
Sequence_details | SMap | S_parent | Sequence | H27M09 | ||||
Flanking_sequences | acatgccaacaaggaaaggctggaccacca | gaccaccaggagatgatggaaaggacggaa | ||||||
Mapping_target | H27M09 | |||||||
Type_of_mutation | Substitution | g | c | Paper_evidence | WBPaper00027121 | |||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain (62) | ||||||||
Laboratory | CB | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00001075 | ||||||
Transcript | H27M09.4.1 (12) | |||||||
Interactor | WBInteraction000518462 | |||||||
Genetics | Interpolated_map_position | I | 1.37773 | |||||
Mapping_data | In_2_point | 5 | ||||||
241 | ||||||||
242 | ||||||||
5116 | ||||||||
5118 | ||||||||
6055 | ||||||||
In_multi_point (66) | ||||||||
In_pos_neg_data (55) | ||||||||
Description | Phenotype | WBPhenotype:0000035 | Paper_evidence | WBPaper00000031 | ||||
Curator_confirmed | WBPerson48 | |||||||
WBPhenotype:0000062 | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | ts lethal (25C). Lethality enhanced by Smg. ES3 (all stages 20C). | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
Temperature_sensitive | Heat_sensitive | 25 | Person_evidence | WBPerson261 | ||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000519 | Paper_evidence | WBPaper00033444 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | Mutant strains tested showed altered fitness compared to wild type when exposed to different bacterial environments such as E. coli, M. luteus, and Pseudomonas sp.and B. megaterium | Paper_evidence | WBPaper00033444 | |||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0000583 | Paper_evidence | WBPaper00000031 | ||||||
Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson48 | |||||||
WBPerson712 | ||||||||
Remark | Medium dumpy adult, strong dumpy L1 (20C). Easy to score (ES3) at all stages (20C). | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_assay | Temperature | 20 | Person_evidence | WBPerson261 | ||||
Curator_confirmed | WBPerson712 | |||||||
Ease_of_scoring | ES3_Easy_to_score | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_not_observed (2) | ||||||||
Reference | WBPaper00001328 | |||||||
WBPaper00000031 | ||||||||
WBPaper00004883 | ||||||||
WBPaper00024024 | ||||||||
WBPaper00014397 | ||||||||
WBPaper00016102 | ||||||||
WBPaper00025792 | ||||||||
WBPaper00033444 | ||||||||
WBPaper00061175 | ||||||||
Remark | Created by WBPerson51134 from the NN_VFP_triage_pipeline | |||||||
Variation stub/paper connection generated from the May 2021 NN VFP dataset. | ||||||||
Method | Substitution_allele |