WormBase Tree Display for Variation: WBVar00145425
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| WBVar00145425 | Evidence | Paper_evidence | WBPaper00031367 | ||||
|---|---|---|---|---|---|---|---|
| WBPaper00003177 | |||||||
| Name | Public_name | ga117 | |||||
| Other_name | F43C1.2b.1:c.333-1G>A | ||||||
| F43C1.2a.1:c.129-1G>A | |||||||
| F43C1.2a.2:c.129-1G>A | |||||||
| HGVSg | CHROMOSOME_III:g.4219315C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | F43C1 | |||
| Flanking_sequences | tttcttaacttttaattgtatatttttaca | ctctgcacttgacacaattactcgtgatcg | |||||
| Mapping_target | F43C1 | ||||||
| Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00003177 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00033910 | ||||||
| WBStrain00052063 | |||||||
| WBStrain00052064 | |||||||
| Laboratory | SD | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00003401 | |||||
| Transcript | F43C1.2a.2 | VEP_consequence | splice_acceptor_variant | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | F43C1.2a.2:c.129-1G>A | ||||||
| Intron_number | 2/6 | ||||||
| F43C1.2b.1 | VEP_consequence | splice_acceptor_variant | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F43C1.2b.1:c.333-1G>A | ||||||
| Intron_number | 3/6 | ||||||
| F43C1.2a.1 | VEP_consequence | splice_acceptor_variant | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F43C1.2a.1:c.129-1G>A | ||||||
| Intron_number | 3/7 | ||||||
| Interactor | WBInteraction000501189 | ||||||
| WBInteraction000504884 | |||||||
| WBInteraction000556851 | |||||||
| WBInteraction000556857 | |||||||
| WBInteraction000556860 | |||||||
| Genetics | Interpolated_map_position | III | -3.65916 | ||||
| Description | Phenotype (12) | ||||||
| Phenotype_not_observed | WBPhenotype:0001813 | Paper_evidence | WBPaper00031318 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Remark | HIM-3 staining of paired chromosomes is normal in these mutant germlines | Paper_evidence | WBPaper00031318 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Variation_effect | Null | Paper_evidence | WBPaper00031318 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Reference | WBPaper00038448 | ||||||
| WBPaper00031318 | |||||||
| WBPaper00037875 | |||||||
| WBPaper00031914 | |||||||
| WBPaper00025636 | |||||||
| WBPaper00049050 | |||||||
| Method | Substitution_allele |
