WormBase Tree Display for Variation: WBVar00145462
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| WBVar00145462 | Name | Public_name | gk5 | ||||
|---|---|---|---|---|---|---|---|
| Other_name | C27F2.2a.1:c.1753-1_3533del | ||||||
| C27F2.2b.1:c.1687-1_3467del | |||||||
| HGVSg | CHROMOSOME_III:g.4973865_4976834del | ||||||
| Sequence_details | SMap | S_parent | Sequence | C27F2 | |||
| Flanking_sequences | ttaaattaaaattccaattatttattttca | catttatgtattcattggatgtatgattgg | |||||
| Mapping_target | C27F2 | ||||||
| Type_of_mutation | Deletion | ||||||
| PCR_product | GK5_external | ||||||
| GK5_internal | |||||||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00035028 | ||||||
| WBStrain00035029 | |||||||
| WBStrain00035479 | |||||||
| WBStrain00035481 | |||||||
| WBStrain00040855 | |||||||
| WBStrain00040862 | |||||||
| WBStrain00040863 | |||||||
| WBStrain00040864 | |||||||
| WBStrain00040865 | |||||||
| Component_of_genotype | WBGenotype00000089 | ||||||
| WBGenotype00000090 | |||||||
| Laboratory | VC | ||||||
| Person | WBPerson427 | ||||||
| KO_consortium_allele | |||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00003558 | |||||
| Transcript | C27F2.2b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | C27F2.2b.1:c.1687-1_3467del | ||||||
| cDNA_position | ?-3467 | ||||||
| CDS_position | ?-3467 | ||||||
| Protein_position | ?-1156 | ||||||
| Intron_number | 7-15/21 | ||||||
| Exon_number | 8-16/22 | ||||||
| C27F2.2a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | C27F2.2a.1:c.1753-1_3533del | ||||||
| cDNA_position | ?-3623 | ||||||
| CDS_position | ?-3533 | ||||||
| Protein_position | ?-1178 | ||||||
| Intron_number | 9-17/24 | ||||||
| Exon_number | 10-18/25 | ||||||
| Interactor | WBInteraction000501184 | ||||||
| WBInteraction000586830 | |||||||
| Description | Phenotype (15) | ||||||
| Phenotype_not_observed | WBPhenotype:0000643 | Paper_evidence | WBPaper00031592 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Remark | The single mutant displays normal locomotion. | Paper_evidence | WBPaper00031592 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Reference | WBPaper00043908 | ||||||
| WBPaper00031592 | |||||||
| WBPaper00019702 | |||||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||
| Method | KO_consortium_allele |
