WormBase Tree Display for Variation: WBVar00145545

WBVar00145545 Name: Public_name: gk138
    Other_name: F52B5.5b.2:c.-402_31-83del
      F52B5.5b.4:c.-402_31-83del
      F52B5.5b.3:c.-846_31-83del
      F52B5.5a.1:c.940_1372-83del
    HGVSg: CHROMOSOME_I:g.8326289_8327948del
  Sequence_details: SMap: S_parent: Sequence: F52B5
    Flanking_sequences: gtgatgaagtgtcgaagtcatactgaacga ttttttaaatatatatgctctaattcccaa
    Mapping_target: F52B5
    Type_of_mutation: Deletion
    PCR_product: GK138_external
      GK138_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00034811
      WBStrain00035557
    Laboratory: VC
    Person: WBPerson427
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00000467
    Transcript: F52B5.5b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2/5
        Exon_number: 1-2/6
      F52B5.5b.4 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F52B5.5b.4:c.-402_31-83del
        cDNA_position: 1679-?
        Intron_number: 6-9/12
        Exon_number: 6-9/13
      F52B5.5b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F52B5.5b.2:c.-402_31-83del
        cDNA_position: 961-?
        Intron_number: 8-11/14
        Exon_number: 8-11/15
      F52B5.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F52B5.5a.1:c.940_1372-83del
        cDNA_position: 946-?
        CDS_position: 940-?
        Protein_position: 314-?
        Intron_number: 9-11/14
        Exon_number: 9-11/15
      F52B5.5b.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F52B5.5b.3:c.-846_31-83del
        cDNA_position: 953-?
        Intron_number: 8-10/13
        Exon_number: 8-10/14
    Interactor (30)
  Genetics: Mapping_data: In_multi_point: 4212
  Description: Phenotype (15)
    Phenotype_not_observed: WBPhenotype:0000112 Paper_evidence: WBPaper00032356
        Curator_confirmed: WBPerson712
        Remark: Endogenous ING-3 was present in animals as assayed by a single 45kDa band on western blots recognized by mouse polyclonal anti-ING-3. Paper_evidence: WBPaper00032356
            Curator_confirmed: WBPerson712
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00032356
            Curator_confirmed: WBPerson712
      WBPhenotype:0000436 Paper_evidence: WBPaper00032356
        Curator_confirmed: WBPerson712
        Remark: Endogenous ING-3 was present in animals as assayed by a single 45kDa band on western blots recognized by mouse polyclonal anti-ING-3. Paper_evidence: WBPaper00032356
            Curator_confirmed: WBPerson712
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00032356
            Curator_confirmed: WBPerson712
  Reference (16)
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele