WormBase Tree Display for Variation: WBVar00145594
expand all nodes | collapse all nodes | view schema
| WBVar00145594 | Name | Public_name | gk187 | ||
|---|---|---|---|---|---|
| Other_name | D1014.1.1:c.12_404del | ||||
| CE07003:p.Ser5_Val135del | |||||
| HGVSg | CHROMOSOME_V:g.8157757_8158149del | ||||
| Sequence_details | SMap | S_parent | Sequence | D1014 | |
| Flanking_sequences | attcataatctttcagatcatgtccccggt | tggaaaatggcatcttggaattaatgaaaa | |||
| Mapping_target | D1014 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | gk187_external | ||||
| gk187_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035723 | ||||
| Laboratory | VC | ||||
| Person | WBPerson427 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006309 | |||
| Transcript | D1014.1.1 | VEP_consequence | inframe_deletion | ||
| VEP_impact | MODERATE | ||||
| HGVSc | D1014.1.1:c.12_404del | ||||
| HGVSp | CE07003:p.Ser5_Val135del | ||||
| cDNA_position | 12-404 | ||||
| CDS_position | 12-404 | ||||
| Protein_position | 4-135 | ||||
| Exon_number | 1/6 | ||||
| Codon_change | gtGAGCCTATTACTACTTCTTCTATTCCCATTGAGCACTTTTCAACAACGAGAAGATTGCACAGTGCAGCCACCATCTCCACGTCATCCGAACATTGTGATTCTTATGATTGACGACTTGGGTTACGGTGACATTGCGTCATACGGTCACCCGACTCAAGAATACACACAAGTCGATCGGATGGCAGCAGAAGGCACCCGGTTTACACAAGCATATTCAGCAGATAGTATGTGCTCACCTAGCAGAGCTGGATTCATTACTGGACGATTACCTATTCGATTAGGTATAGTTGGAGGACGGAGAGTTTTTGTTCCTTATGATATTGGAGGCCTTCCAAAAAGTGAGACAACAATGGCTGAAATGCTTCAAGAAGCAGGATATGCAACTGGCATGGTt/gtt | ||||
| Amino_acid_change | VSLLLLLLFPLSTFQQREDCTVQPPSPRHPNIVILMIDDLGYGDIASYGHPTQEYTQVDRMAAEGTRFTQAYSADSMCSPSRAGFITGRLPIRLGIVGGRRVFVPYDIGGLPKSETTMAEMLQEAGYATGMV/V | ||||
| Isolation | Mutagen | TMP/UV | |||
| Genetics | Mapping_data | In_multi_point | 4712 | ||
| Reference | WBPaper00065317 | ||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
