WormBase Tree Display for Variation: WBVar00145661
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| WBVar00145661 | Name | Public_name | gk254 | ||
|---|---|---|---|---|---|
| Other_name | C30H6.2.1:c.-24-152_279delinsACTTTTATATTTTTA | ||||
| HGVSg | CHROMOSOME_IV:g.17366014_17366633delinsTAAAAATATAAAAGT | ||||
| Sequence_details | SMap | S_parent | Sequence | C30H6 | |
| Flanking_sequences | gtgatgactatgcccgtgtcctgatgttcc | ataaaagtggacagtccactaaaagcagca | |||
| Mapping_target | C30H6 | ||||
| Type_of_mutation | Insertion | TAAAAATATAAAAGT | |||
| Deletion | |||||
| PCR_product | gk254_external | ||||
| gk254_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035799 | ||||
| Laboratory | VC | ||||
| Person | WBPerson427 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00199171 | |||
| WBGene00006487 | |||||
| Transcript | C30H6.2.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-305 | ||||
| CDS_position | ?-279 | ||||
| Protein_position | ?-93 | ||||
| Intron_number | 2-3/8 | ||||
| Exon_number | 1-4/9 | ||||
| C30H6.19 | VEP_consequence | non_coding_transcript_exon_variant | |||
| VEP_impact | MODIFIER | ||||
| cDNA_position | ?-4 | ||||
| Exon_number | 1/1 | ||||
| C30H6.2.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C30H6.2.1:c.-24-152_279delinsACTTTTATATTTTTA | ||||
| cDNA_position | ?-352 | ||||
| CDS_position | ?-279 | ||||
| Protein_position | ?-93 | ||||
| Intron_number | 1-4/9 | ||||
| Exon_number | 2-5/10 | ||||
| Isolation | Mutagen | TMP/UV | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
