WormBase Tree Display for Variation: WBVar00145722

WBVar00145722 Name: Public_name: gk315
    Other_name: ZC8.3.1:c.225+103_856del
    HGVSg: CHROMOSOME_X:g.4999651_5000788del
  Sequence_details: SMap: S_parent: Sequence: ZC8
    Flanking_sequences: ttttcattcattcatttcttctataaatga cagaatatcgaaaaacaattaaactacatg
    Mapping_target: ZC8
    Type_of_mutation: Deletion
    PCR_product: gk315_external
      gk315_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036009
    Laboratory: VC
    Person: WBPerson427
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00022499
    Transcript: ZC8.3.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZC8.3.1:c.225+103_856del
        cDNA_position: ?-863
        CDS_position: ?-856
        Protein_position: ?-286
        Intron_number: 3-7/11
        Exon_number: 4-8/12
    Interactor: WBInteraction000521297
      WBInteraction000521430
      WBInteraction000521432
  Isolation: Mutagen: TMP/UV
  Genetics: Mapping_data: In_multi_point: 4925
  Description: Phenotype: WBPhenotype:0001785 Paper_evidence: WBPaper00046360
        Curator_confirmed: WBPerson3142
      WBPhenotype:0002078 Paper_evidence: WBPaper00045092
        Curator_confirmed: WBPerson712
        Remark: In vivo, early larval stage L1 and L2 (but not L3 and L4) set-30 mutant worms displayed lower H3K4me levels. Paper_evidence: WBPaper00045092
            Curator_confirmed: WBPerson712
        EQ_annotations: Life_stage: WBls:0000024 PATO:0000460 Paper_evidence: WBPaper00045092
                Curator_confirmed: WBPerson712
            WBls:0000027 PATO:0000460 Paper_evidence: WBPaper00045092
                Curator_confirmed: WBPerson712
    Phenotype_not_observed: WBPhenotype:0000039 Paper_evidence: WBPaper00049012
        Curator_confirmed: WBPerson11446
        Remark: these mutant worms all have normal life spans Paper_evidence: WBPaper00049012
            Curator_confirmed: WBPerson11446
  Reference: WBPaper00045092
    WBPaper00046360
    WBPaper00049012
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele