WormBase Tree Display for Variation: WBVar00145777

WBVar00145777 Name: Public_name: gk371
    Other_name: Y57G11A.1d.1:c.1336+77_1731del
      Y57G11A.1a.1:c.481+77_777del
      Y57G11A.1f.1:c.1336+77_1632del
      Y57G11A.1b.1:c.1336+77_1632del
      Y57G11A.1e.1:c.1360+77_1656del
    HGVSg: CHROMOSOME_IV:g.14491760_14492597del
  Sequence_details: SMap: S_parent: Sequence: Y57G11A
    Flanking_sequences: acttttcctcgccaacttatatctctgaaa ttttaattattgtttttgcagttatatttt
    Mapping_target: Y57G11A
    Type_of_mutation: Deletion
    PCR_product: gk371_external
      gk371_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036146
    Laboratory: VC
    Person: WBPerson427
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00235109
      WBGene00013289
    Transcript: Y57G11A.226 VEP_consequence: splice_donor_variant,non_coding_transcript_exon_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/1
        Exon_number: 1/2
      Y57G11A.1a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y57G11A.1a.1:c.481+77_777del
        cDNA_position: ?-969
        CDS_position: ?-777
        Protein_position: ?-259
        Intron_number: 4/9
        Exon_number: 5/10
      Y57G11A.1f.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y57G11A.1f.1:c.1336+77_1632del
        cDNA_position: ?-1632
        CDS_position: ?-1632
        Protein_position: ?-544
        Intron_number: 9/13
        Exon_number: 10/14
      Y57G11A.1e.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y57G11A.1e.1:c.1360+77_1656del
        cDNA_position: ?-1656
        CDS_position: ?-1656
        Protein_position: ?-552
        Intron_number: 10/14
        Exon_number: 11/15
      Y57G11A.1d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y57G11A.1d.1:c.1336+77_1731del
        cDNA_position: ?-1731
        CDS_position: ?-1731
        Protein_position: ?-577
        Intron_number: 9-10/13
        Exon_number: 10-11/14
      Y57G11A.1b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y57G11A.1b.1:c.1336+77_1632del
        cDNA_position: ?-1659
        CDS_position: ?-1632
        Protein_position: ?-544
        Intron_number: 10/14
        Exon_number: 11/15
  Isolation: Mutagen: TMP/UV
  Genetics: Mapping_data: In_multi_point: 5181
  Description: Phenotype: WBPhenotype:0001785 Paper_evidence: WBPaper00046360
        Curator_confirmed: WBPerson3142
  Reference: WBPaper00046360
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele