WormBase Tree Display for Variation: WBVar00145784
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WBVar00145784 | Name | Public_name | gk378 | ||
---|---|---|---|---|---|
HGVSg | CHROMOSOME_V:g.8630888_8631553del | ||||
Sequence_details | SMap | S_parent | Sequence | F41E6 | |
Flanking_sequences | tcttgagttgcgaaatttgtacaaacactt | tacgcgtttgcaaccaccgcgcgcgttttt | |||
Mapping_target | F41E6 | ||||
Type_of_mutation | Deletion | ||||
PCR_product | gk378_external | ||||
gk378_internal | |||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00036154 | ||||
WBStrain00040747 | |||||
WBStrain00040748 | |||||
WBStrain00056628 | |||||
Laboratory | VC | ||||
DCD | |||||
Person | WBPerson427 | ||||
KO_consortium_allele | |||||
Status | Live | ||||
Affects | Gene | WBGene00018294 | |||
Transcript | F41E6.13b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||
VEP_impact | HIGH | ||||
Intron_number | 2-4/8 | ||||
Exon_number | 1-4/9 | ||||
F41E6.13a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
VEP_impact | HIGH | ||||
Intron_number | 1-3/7 | ||||
Exon_number | 1-3/8 | ||||
Interactor | WBInteraction000051403 | ||||
WBInteraction000501086 | |||||
WBInteraction000501087 | |||||
WBInteraction000501088 | |||||
WBInteraction000505157 | |||||
WBInteraction000517938 | |||||
Isolation | Mutagen | TMP/UV | |||
Genetics | Mapping_data | In_multi_point | 5220 | ||
Description (2) | |||||
Reference (11) | |||||
Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
Method | KO_consortium_allele |