WormBase Tree Display for Variation: WBVar00146193
expand all nodes | collapse all nodes | view schema
WBVar00146193 | Name | Public_name | gk962 | ||
---|---|---|---|---|---|
Other_name | Y54G2A.36.1:c.-320-1321_-320-467del | ||||
Y54G2A.36.5:c.-1641_-787del | |||||
Y54G2A.36.4:c.-248-1347_-248-493del | |||||
Y54G2A.36.2:c.-294-1347_-294-493del | |||||
Y54G2A.20:n.233_699del | |||||
Y54G2A.36.3:c.-283-1358_-283-504del | |||||
HGVSg | CHROMOSOME_IV:g.2899552_2900406del | ||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | |
Flanking_sequences | taatctgatacgattctacctgatatcttg | aatggttgagaactgacgctttggatgaat | |||
Mapping_target | Y54G2A | ||||
Type_of_mutation | Deletion | ||||
PCR_product | GK962_external | ||||
GK962_internal | |||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00037099 | ||||
Laboratory | VC | ||||
Person | WBPerson427 | ||||
KO_consortium_allele | |||||
Status | Live | ||||
Affects | Gene | WBGene00021898 | |||
WBGene00021885 | |||||
Transcript | Y54G2A.36.2 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.36.2:c.-294-1347_-294-493del | ||||
Intron_number | 1/4 | ||||
Y54G2A.36.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.36.1:c.-320-1321_-320-467del | ||||
Intron_number | 1/4 | ||||
Y54G2A.36.5 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.36.5:c.-1641_-787del | ||||
cDNA_position | 1449-2303 | ||||
Exon_number | 1/4 | ||||
Y54G2A.36.4 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.36.4:c.-248-1347_-248-493del | ||||
Intron_number | 1/5 | ||||
Y54G2A.36.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.36.3:c.-283-1358_-283-504del | ||||
Intron_number | 1/4 | ||||
Pseudogene | Y54G2A.20 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,non_coding_transcript_exon_variant,intron_variant | ||
VEP_impact | HIGH | ||||
HGVSc | Y54G2A.20:n.233_699del | ||||
cDNA_position | 233-699 | ||||
Intron_number | 1-2/13 | ||||
Exon_number | 1-3/14 | ||||
Isolation | Mutagen | UV/TMP | |||
Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
Method | KO_consortium_allele |