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WormBase Tree Display for Variation: WBVar00146193

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Name Class

WBVar00146193NamePublic_namegk962
Other_nameY54G2A.36.1:c.-320-1321_-320-467del
Y54G2A.36.5:c.-1641_-787del
Y54G2A.36.4:c.-248-1347_-248-493del
Y54G2A.36.2:c.-294-1347_-294-493del
Y54G2A.20:n.233_699del
Y54G2A.36.3:c.-283-1358_-283-504del
HGVSgCHROMOSOME_IV:g.2899552_2900406del
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencestaatctgatacgattctacctgatatcttgaatggttgagaactgacgctttggatgaat
Mapping_targetY54G2A
Type_of_mutationDeletion
PCR_productGK962_external
GK962_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00037099
LaboratoryVC
PersonWBPerson427
KO_consortium_allele
StatusLive
AffectsGeneWBGene00021898
WBGene00021885
TranscriptY54G2A.36.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.2:c.-294-1347_-294-493del
Intron_number1/4
Y54G2A.36.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.1:c.-320-1321_-320-467del
Intron_number1/4
Y54G2A.36.5VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScY54G2A.36.5:c.-1641_-787del
cDNA_position1449-2303
Exon_number1/4
Y54G2A.36.4VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.4:c.-248-1347_-248-493del
Intron_number1/5
Y54G2A.36.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.3:c.-283-1358_-283-504del
Intron_number1/4
PseudogeneY54G2A.20VEP_consequencesplice_acceptor_variant,splice_donor_variant,non_coding_transcript_exon_variant,intron_variant
VEP_impactHIGH
HGVScY54G2A.20:n.233_699del
cDNA_position233-699
Intron_number1-2/13
Exon_number1-3/14
IsolationMutagenUV/TMP
RemarkSequenced by the C. elegans Gene Knockout ConsortiumPaper_evidenceWBPaper00041807
MethodKO_consortium_allele