WormBase Tree Display for Variation: WBVar00146212
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| WBVar00146212 | Name | Public_name | gk999 | ||
|---|---|---|---|---|---|
| Other_name | CE22977:p.Ala45_Tyr226delinsHis | ||||
| Y73F8A.8.1:c.133_676delinsC | |||||
| HGVSg | CHROMOSOME_IV:g.15290488_15291031delinsG | ||||
| Sequence_details | SMap | S_parent | Sequence | Y73F8A | |
| Flanking_sequences | ttgtctggcatggttgagtacattcctgat | ttgttggcatgaacaacttggttgaacttg | |||
| Mapping_target | Y73F8A | ||||
| Type_of_mutation | Insertion | G | |||
| Deletion | |||||
| PCR_product | GK999_external | ||||
| GK999_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037171 | ||||
| Laboratory | VC | ||||
| Person | WBPerson427 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00198797 | |||
| WBGene00004170 | |||||
| Transcript | Y73F8A.8.1 | VEP_consequence | protein_altering_variant | ||
| VEP_impact | MODERATE | ||||
| HGVSc | Y73F8A.8.1:c.133_676delinsC | ||||
| HGVSp | CE22977:p.Ala45_Tyr226delinsHis | ||||
| cDNA_position | 133-676 | ||||
| CDS_position | 133-676 | ||||
| Protein_position | 45-226 | ||||
| Exon_number | 2/2 | ||||
| Codon_change | GCAACTCAACCACAACAGTACAGTTGTTCGTGTCAGAACACTGCTCCAGTCCAGACATCCTGCTCATGTGCCCAACCAGTTCAGCAAGTAACTTACCAAGTGCAAACTTCTCAATGTGCTCCAGCTTGTCAGCAGTCTTGCCAGAACCAATGTCAATTTGCTCCATCTATGAATGAGTGTCAATCTTCATGCCAGCAGACTTGTCAGACGTCTTCCTGTTATACTCAAATAGCTGCTCCAGCTCCAGTCCAATGTCAACCATCTTGCATGCCAGCCTGTGAACAATCCTGTGTTGCTCCAGCTCCAGTCACAGTCCAGTGTGTTCCACAATGCCAACAAAAGTGCACTCAACAATGTGTTCAAGCTCAACCAATTCAACAATGTCAACCACAATGTCAGCAGCAATGTGTTCAACAATGTGCTCCAACTGTTGCTCCACAAGTCATCAATGTCAACTTGGGAATCTCTGCTCAATGTGCTCCACAATGCCAACAACAGTGTCAACAACAATGTCTTCTACAACAAGTTCCAGTTCAACAGTGCTat/Cat | ||||
| Amino_acid_change | ATQPQQYSCSCQNTAPVQTSCSCAQPVQQVTYQVQTSQCAPACQQSCQNQCQFAPSMNECQSSCQQTCQTSSCYTQIAAPAPVQCQPSCMPACEQSCVAPAPVTVQCVPQCQQKCTQQCVQAQPIQQCQPQCQQQCVQQCAPTVAPQVINVNLGISAQCAPQCQQQCQQQCLLQQVPVQQCY/H | ||||
| Y73F8A.1169 | VEP_consequence | non_coding_transcript_exon_variant | |||
| VEP_impact | MODIFIER | ||||
| cDNA_position | ?-91 | ||||
| Exon_number | 1/1 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
