WormBase Tree Display for Variation: WBVar00146256

WBVar00146256 Name: Public_name: gk1050
    HGVSg: CHROMOSOME_V:g.1626667_1626822del
  Sequence_details: SMap: S_parent: Sequence: Y46H3D
    Flanking_sequences: TTGTCAAAAAAGTACTACTCGTTGCTTCAT AAAACAGGATAAATAATTGAATGATTGAAA
    Mapping_target: Y46H3D
    CGH_deleted_probes: AGTTTCTTCAATGGGTAAAATGGACCCATCGCTACGTTAAGATCCACTAT ATTCTCCACAGACCCTACAAATCTGATGAGGGGTAGGTATTTCCATCTGG
    Type_of_mutation: Deletion
    PCR_product: GK1050_external
      GK1050_internal
    SeqStatus: Sequenced
    Deletion_verification: Diagnostic PCR validation equivocal, and CGH data confirm a smaller deletion than that identified by PCR.
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00037071
    Laboratory: VC
    Person: WBPerson427
    Detection_method: Oligo Array CGH
    Status: Live
  Affects: Gene: WBGene00021610
    Transcript: Y46H3D.6b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2/6
        Exon_number: 1-2/7
      Y46H3D.6a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/5
        Exon_number: 1/6
  Genetics: Interpolated_map_position: V -17.8393
  Remark: Flanking sequences represent the nearest array oligo sequences present in the deletion chromsome on the basis of fluorescence ratio. These should not be considered hard breakpoints in the absence of actual sequence data.
  Method: Deletion_allele