WormBase Tree Display for Variation: WBVar00146295

WBVar00146295 Name: Public_name: gk1190
    Other_name: R11G1.6a.1:c.77_247+31del
      R11G1.6b.1:c.77_247+31del
    HGVSg: CHROMOSOME_X:g.3644578_3644779del
  Sequence_details: SMap: S_parent: Sequence: R11G1
    Flanking_sequences: GCATTTAAGTAAGTTAGTGTAATGTATTTT ACACTTTTTCTTGAAATTGTTTGGCATGAT
    Mapping_target: R11G1
    CGH_deleted_probes: AAAACAATGAGTACGGATTCAAAAATAAAACCTTGTAGGAAACTTGTGTA GGATTCGATGGCATCTGTATAGAGTTGAATGGCATAATTATAGGCATTTA
    Type_of_mutation: Deletion
    PCR_product: GK1190_external
      GK1190_internal
    SeqStatus: Sequenced
    Deletion_verification: Deletion confirmed by PCR.
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00037974
    Laboratory: VC
    Person: WBPerson427
    Detection_method: Oligo Array CGH
    Status: Live
  Affects: Gene: WBGene00020012
    Transcript: R11G1.6b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R11G1.6b.1:c.77_247+31del
        cDNA_position: 107-?
        CDS_position: 77-?
        Protein_position: 26-?
        Intron_number: 2/16
        Exon_number: 2/17
      R11G1.6a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R11G1.6a.1:c.77_247+31del
        cDNA_position: 118-?
        CDS_position: 77-?
        Protein_position: 26-?
        Intron_number: 2/16
        Exon_number: 2/17
  Genetics: Interpolated_map_position: X -9.91238
  Remark: Flanking sequences represent the nearest array oligo sequences present in the deletion chromsome on the basis of fluorescence ratio. These should not be considered hard breakpoints in the absence of actual sequence data.
  Method: Deletion_allele