WormBase Tree Display for Variation: WBVar00153597
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WBVar00153597 | Name | Public_name | WBVar00153597 | |||
---|---|---|---|---|---|---|
Other_name | haw6847 | |||||
haw117169 | ||||||
cewivar00166105 | ||||||
CE34256:p.Val374Asp | ||||||
C09D4.4c.1:c.1121T>A | ||||||
CE34254:p.Val371Asp | ||||||
C09D4.4a.1:c.1112T>A | ||||||
CE34255:p.Val371Asp | ||||||
C09D4.4b.1:c.1112T>A | ||||||
HGVSg | CHROMOSOME_I:g.5482967A>T | |||||
Sequence_details | SMap | S_parent | Sequence | C09D4 | ||
Flanking_sequences | ggcattattcaaatctaacaatcca | cagaatttcgagtaaaaacatcttc | ||||
Mapping_target | C09D4 | |||||
Type_of_mutation | Substitution | A | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | |||
WGS_Hawaiian_Waterston | ||||||
WGS_Yanai | ||||||
Million_mutation_project_reanalysis | ||||||
WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00022850 | From_analysis | WGS_De_Bono | ||||
Million_mutation_project_reanalysis | ||||||
WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | ||||
Laboratory | RW | |||||
AX | ||||||
Person | WBPerson1562 | |||||
WBPerson4037 | ||||||
Analysis | WGS_Hawaiian_Waterston | |||||
WGS_De_Bono | ||||||
WGS_Yanai | ||||||
Million_mutation_project_reanalysis | ||||||
History | Acquires_merge | WBVar00537034 | ||||
WBVar01282793 | ||||||
WBVar01344395 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00015635 | ||||
Transcript | C09D4.4b.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | |||||
SIFT | 0.94 | tolerated | ||||
PolyPhen | 0 | benign | ||||
HGVSc | C09D4.4b.1:c.1112T>A | |||||
HGVSp | CE34255:p.Val371Asp | |||||
cDNA_position | 1129 | |||||
CDS_position | 1112 | |||||
Protein_position | 371 | |||||
Exon_number | 10/22 | |||||
Codon_change | gTt/gAt | |||||
Amino_acid_change | V/D | |||||
C09D4.4a.1 | VEP_consequence | missense_variant | ||||
VEP_impact | MODERATE | |||||
SIFT | 0.77 | tolerated | ||||
PolyPhen | 0 | benign | ||||
HGVSc | C09D4.4a.1:c.1112T>A | |||||
HGVSp | CE34254:p.Val371Asp | |||||
cDNA_position | 1130 | |||||
CDS_position | 1112 | |||||
Protein_position | 371 | |||||
Exon_number | 10/22 | |||||
Codon_change | gTt/gAt | |||||
Amino_acid_change | V/D | |||||
C09D4.4c.1 | VEP_consequence | missense_variant | ||||
VEP_impact | MODERATE | |||||
SIFT | 0.69 | tolerated | ||||
PolyPhen | 0 | benign | ||||
HGVSc | C09D4.4c.1:c.1121T>A | |||||
HGVSp | CE34256:p.Val374Asp | |||||
cDNA_position | 1138 | |||||
CDS_position | 1121 | |||||
Protein_position | 374 | |||||
Exon_number | 10/22 | |||||
Codon_change | gTt/gAt | |||||
Amino_acid_change | V/D | |||||
Reference | WBPaper00038208 | |||||
WBPaper00037807 | ||||||
Remark | [20081124 db] this Variation was previously named hw6847 | |||||
Method | WGS_Hawaiian_Waterston |