WormBase Tree Display for Variation: WBVar00154302
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| WBVar00154302 | Name | Public_name | WBVar00154302 | ||
|---|---|---|---|---|---|
| Other_name (13) | |||||
| HGVSg | CHROMOSOME_I:g.7442930C>A | ||||
| Sequence_details | SMap | S_parent | Sequence | ZK524 | |
| Flanking_sequences | ttattttatttaattcaattttagt | atctcaagcttcactggtggccacc | |||
| Mapping_target | ZK524 | ||||
| Type_of_mutation | Substitution | C | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00537467 | |||
| WBVar01345261 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006752 | |||
| Transcript | ZK524.2e.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK524.2e.1:c.1822-1102C>A | ||||
| Intron_number | 13/29 | ||||
| ZK524.2c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK524.2c.1:c.799-1102C>A | ||||
| Intron_number | 5/21 | ||||
| ZK524.2f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK524.2f.1:c.1831-1102C>A | ||||
| Intron_number | 13/29 | ||||
| ZK524.2j.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK524.2j.1:c.1786-1102C>A | ||||
| Intron_number | 13/28 | ||||
| ZK524.2k.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK524.2k.1:c.1777-1102C>A | ||||
| Intron_number | 13/28 | ||||
| ZK524.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK524.2a.1:c.1822-1102C>A | ||||
| Intron_number | 13/29 | ||||
| ZK524.2i.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK524.2i.1:c.1831-1102C>A | ||||
| Intron_number | 13/28 | ||||
| ZK524.2d.1 | VEP_consequence | stop_gained,splice_region_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | ZK524.2d.1:c.1823C>A | ||||
| HGVSp | CE34625:p.Ser608Ter | ||||
| cDNA_position | 1823 | ||||
| CDS_position | 1823 | ||||
| Protein_position | 608 | ||||
| Exon_number | 14/31 | ||||
| Codon_change | tCa/tAa | ||||
| Amino_acid_change | S/* | ||||
| ZK524.2h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK524.2h.1:c.799-1102C>A | ||||
| Intron_number | 5/20 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw7552 | ||||
| Method | WGS_Hawaiian_Waterston |
