WormBase Tree Display for Variation: WBVar00182295
expand all nodes | collapse all nodes | view schema
| WBVar00182295 | Name | Public_name | WBVar00182295 | ||
|---|---|---|---|---|---|
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_III:g.12936129T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | Y37D8A | |
| Flanking_sequences | catcaccatctcaaaatacattaaa | cgaatggaacgtgaaacgatcgttt | |||
| Mapping_target | Y37D8A | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | |||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01338973 | |||
| WBVar00567675 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00012559 | |||
| Transcript | Y37D8A.22b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y37D8A.22b.1:c.144T>C | ||||
| HGVSp | CE53103:p.Asn48= | ||||
| cDNA_position | 146 | ||||
| CDS_position | 144 | ||||
| Protein_position | 48 | ||||
| Exon_number | 3/8 | ||||
| Codon_change | aaT/aaC | ||||
| Amino_acid_change | N | ||||
| Y37D8A.22d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y37D8A.22d.1:c.33T>C | ||||
| HGVSp | CE53129:p.Asn11= | ||||
| cDNA_position | 33 | ||||
| CDS_position | 33 | ||||
| Protein_position | 11 | ||||
| Exon_number | 1/6 | ||||
| Codon_change | aaT/aaC | ||||
| Amino_acid_change | N | ||||
| Y37D8A.22c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y37D8A.22c.1:c.33T>C | ||||
| HGVSp | CE53008:p.Asn11= | ||||
| cDNA_position | 57 | ||||
| CDS_position | 33 | ||||
| Protein_position | 11 | ||||
| Exon_number | 2/7 | ||||
| Codon_change | aaT/aaC | ||||
| Amino_acid_change | N | ||||
| Y37D8A.22a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y37D8A.22a.1:c.144T>C | ||||
| HGVSp | CE31831:p.Asn48= | ||||
| cDNA_position | 146 | ||||
| CDS_position | 144 | ||||
| Protein_position | 48 | ||||
| Exon_number | 3/9 | ||||
| Codon_change | aaT/aaC | ||||
| Amino_acid_change | N | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw49571 | ||||
| Method | WGS_Hawaiian_Waterston |
