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WormBase Tree Display for Variation: WBVar00186549

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Name Class

WBVar00186549EvidencePaper_evidenceWBPaper00038208
NamePublic_nameWBVar00186549
Other_namehaw53825
haw150776
cewivar00036124
CE46116:p.Ile469=
Y54G2A.17b.1:c.1467T>A
Y54G2A.17a.2:c.1407T>A
Y54G2A.17a.3:c.1407T>A
CE46281:p.Ile489=
Y54G2A.17a.1:c.1407T>A
HGVSgCHROMOSOME_IV:g.2873373A>T
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencesctttccagtacacattatgaagcttatgattttattcgcgttcaccagag
Mapping_targetY54G2A
Type_of_mutationSubstitutionAT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (24)
LaboratoryRW
PersonWBPerson1562
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00570641
StatusLive
AffectsGeneWBGene00021882
TranscriptY54G2A.17a.3VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY54G2A.17a.3:c.1407T>A
HGVSpCE46116:p.Ile469=
cDNA_position1452
CDS_position1407
Protein_position469
Exon_number6/8
Codon_changeatT/atA
Amino_acid_changeI
Y54G2A.17b.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY54G2A.17b.1:c.1467T>A
HGVSpCE46281:p.Ile489=
cDNA_position1503
CDS_position1467
Protein_position489
Exon_number7/8
Codon_changeatT/atA
Amino_acid_changeI
Y54G2A.17a.2VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY54G2A.17a.2:c.1407T>A
HGVSpCE46116:p.Ile469=
cDNA_position1548
CDS_position1407
Protein_position469
Exon_number7/9
Codon_changeatT/atA
Amino_acid_changeI
Y54G2A.17a.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY54G2A.17a.1:c.1407T>A
HGVSpCE46116:p.Ile469=
cDNA_position1497
CDS_position1407
Protein_position469
Exon_number7/9
Codon_changeatT/atA
Amino_acid_changeI
ReferenceWBPaper00038208
Remark[20081124 db] this Variation was previously named hw53825
MethodWGS_Hawaiian_Waterston