WormBase Tree Display for Variation: WBVar00186549
expand all nodes | collapse all nodes | view schema
WBVar00186549 | Evidence | Paper_evidence | WBPaper00038208 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00186549 | |||
Other_name | haw53825 | ||||
haw150776 | |||||
cewivar00036124 | |||||
CE46116:p.Ile469= | |||||
Y54G2A.17b.1:c.1467T>A | |||||
Y54G2A.17a.2:c.1407T>A | |||||
Y54G2A.17a.3:c.1407T>A | |||||
CE46281:p.Ile489= | |||||
Y54G2A.17a.1:c.1407T>A | |||||
HGVSg | CHROMOSOME_IV:g.2873373A>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | |
Flanking_sequences | ctttccagtacacattatgaagctt | atgattttattcgcgttcaccagag | |||
Mapping_target | Y54G2A | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (24) | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00570641 | |||
Status | Live | ||||
Affects | Gene | WBGene00021882 | |||
Transcript | Y54G2A.17a.3 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | Y54G2A.17a.3:c.1407T>A | ||||
HGVSp | CE46116:p.Ile469= | ||||
cDNA_position | 1452 | ||||
CDS_position | 1407 | ||||
Protein_position | 469 | ||||
Exon_number | 6/8 | ||||
Codon_change | atT/atA | ||||
Amino_acid_change | I | ||||
Y54G2A.17b.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | Y54G2A.17b.1:c.1467T>A | ||||
HGVSp | CE46281:p.Ile489= | ||||
cDNA_position | 1503 | ||||
CDS_position | 1467 | ||||
Protein_position | 489 | ||||
Exon_number | 7/8 | ||||
Codon_change | atT/atA | ||||
Amino_acid_change | I | ||||
Y54G2A.17a.2 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | Y54G2A.17a.2:c.1407T>A | ||||
HGVSp | CE46116:p.Ile469= | ||||
cDNA_position | 1548 | ||||
CDS_position | 1407 | ||||
Protein_position | 469 | ||||
Exon_number | 7/9 | ||||
Codon_change | atT/atA | ||||
Amino_acid_change | I | ||||
Y54G2A.17a.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | Y54G2A.17a.1:c.1407T>A | ||||
HGVSp | CE46116:p.Ile469= | ||||
cDNA_position | 1497 | ||||
CDS_position | 1407 | ||||
Protein_position | 469 | ||||
Exon_number | 7/9 | ||||
Codon_change | atT/atA | ||||
Amino_acid_change | I | ||||
Reference | WBPaper00038208 | ||||
Remark | [20081124 db] this Variation was previously named hw53825 | ||||
Method | WGS_Hawaiian_Waterston |