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WormBase Tree Display for Variation: WBVar00186552

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Name Class

WBVar00186552NamePublic_nameWBVar00186552
Other_namehaw53828
cewivar00203577
Y54G2A.17a.3:c.1368+578T>A
Y54G2A.17b.1:c.1428+578T>A
Y54G2A.17a.2:c.1368+578T>A
Y54G2A.17a.1:c.1368+578T>A
HGVSgCHROMOSOME_IV:g.2874617A>T
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencestcgaaaaaagatttcagaaatgtttaaaaaaaaaattttttttaatatta
Mapping_targetY54G2A
Type_of_mutationSubstitutionAT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (12)
LaboratoryRW
PersonWBPerson1562
AnalysisWGS_Hawaiian_Waterston
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00021882
TranscriptY54G2A.17a.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17a.3:c.1368+578T>A
Intron_number5/7
Y54G2A.17b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17b.1:c.1428+578T>A
Intron_number6/7
Y54G2A.17a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17a.2:c.1368+578T>A
Intron_number6/8
Y54G2A.17a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17a.1:c.1368+578T>A
Intron_number6/8
Remark[20081124 db] this Variation was previously named hw53828
MethodWGS_Hawaiian_Waterston