WormBase Tree Display for Variation: WBVar00186552
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WBVar00186552 | Name | Public_name | WBVar00186552 | ||
---|---|---|---|---|---|
Other_name | haw53828 | ||||
cewivar00203577 | |||||
Y54G2A.17a.3:c.1368+578T>A | |||||
Y54G2A.17b.1:c.1428+578T>A | |||||
Y54G2A.17a.2:c.1368+578T>A | |||||
Y54G2A.17a.1:c.1368+578T>A | |||||
HGVSg | CHROMOSOME_IV:g.2874617A>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | |
Flanking_sequences | tcgaaaaaagatttcagaaatgttt | aaaaaaaaaattttttttaatatta | |||
Mapping_target | Y54G2A | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (12) | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00021882 | |||
Transcript | Y54G2A.17a.3 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.17a.3:c.1368+578T>A | ||||
Intron_number | 5/7 | ||||
Y54G2A.17b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.17b.1:c.1428+578T>A | ||||
Intron_number | 6/7 | ||||
Y54G2A.17a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.17a.2:c.1368+578T>A | ||||
Intron_number | 6/8 | ||||
Y54G2A.17a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.17a.1:c.1368+578T>A | ||||
Intron_number | 6/8 | ||||
Remark | [20081124 db] this Variation was previously named hw53828 | ||||
Method | WGS_Hawaiian_Waterston |