WormBase Tree Display for Variation: WBVar00188977

WBVar00188977 Evidence: Paper_evidence: WBPaper00038208
  Name: Public_name: WBVar00188977
    Other_name: haw56253
      haw152598
      cewivar00039316
      CE49225:p.Lys340Glu
      F36H12.2b.1:c.1018A>G
      F36H12.2a.1:c.922A>G
      CE34854:p.Lys308Glu
      F36H12.17.1:c.463+927T>C
    HGVSg: CHROMOSOME_IV:g.5275812A>G
  Sequence_details: SMap: S_parent: Sequence: F36H12
    Flanking_sequences: aaatcatgaaattcccaatattctc aagaaaatagcactgaaaggtacta
    Mapping_target: F36H12
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00000032 From_analysis: Million_mutation_project_reanalysis
      WBStrain00004600 From_analysis: Million_mutation_project_reanalysis
      WBStrain00004602 From_analysis: WGS_Hawaiian_Waterston
          WGS_Yanai
          Million_mutation_project_reanalysis
      WBStrain00006629 From_analysis: Million_mutation_project_reanalysis
      WBStrain00006637 From_analysis: Million_mutation_project_reanalysis
      WBStrain00006640 From_analysis: Million_mutation_project_reanalysis
      WBStrain00008273 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022850 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022868 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022878 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022899 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022902 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022930 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023072 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023139 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023192 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023286 From_analysis: Million_mutation_project_reanalysis
      WBStrain00024204 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027648 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027660 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027662 From_analysis: Million_mutation_project_reanalysis
    Laboratory: RW
    Person: WBPerson1562
      WBPerson4037
    Analysis: WGS_Hawaiian_Waterston
      WGS_Yanai
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar00572463
    Status: Live
  Affects: Gene: WBGene00018118
      WBGene00018130
    Transcript: F36H12.2a.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        SIFT: 0.8 tolerated_low_confidence
        PolyPhen: 0 benign
        HGVSc: F36H12.2a.1:c.922A>G
        HGVSp: CE34854:p.Lys308Glu
        cDNA_position: 922
        CDS_position: 922
        Protein_position: 308
        Exon_number: 4/6
        Codon_change: Aaa/Gaa
        Amino_acid_change: K/E
      F36H12.17.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F36H12.17.1:c.463+927T>C
        Intron_number: 4/11
      F36H12.2b.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        SIFT: 0.83 tolerated_low_confidence
        PolyPhen: 0 benign
        HGVSc: F36H12.2b.1:c.1018A>G
        HGVSp: CE49225:p.Lys340Glu
        cDNA_position: 1020
        CDS_position: 1018
        Protein_position: 340
        Exon_number: 6/8
        Codon_change: Aaa/Gaa
        Amino_acid_change: K/E
  Reference: WBPaper00038208
  Remark: [20081124 db] this Variation was previously named hw56253
  Method: WGS_Hawaiian_Waterston