WormBase Tree Display for Variation: WBVar00216747
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WBVar00216747 | Name | Public_name | WBVar00216747 | ||
---|---|---|---|---|---|
Other_name | pas28523 | ||||
cewivar00115773 | |||||
R12H7.1a.1:c.*103T>C | |||||
R12H7.1a.2:c.*103T>C | |||||
HGVSg | CHROMOSOME_X:g.13215930T>C | ||||
Sequence_details | SMap | S_parent | Sequence | R12H7 | |
Flanking_sequences | attttattagatttgcactattgtgaaaaaaaaagaaataacttttacactgaccgaaattaaaccccatttcaggatggtgttttcctacttcgtatggttgcaactcacgccggagaactaccctgttacgagcttgcgaaaacgttatggaacaactactgtgacaataaagaaggaaaaatgcacgacgtgtgacacaccccaacttcgtagctttttcaatttcttctaacaccagttctcaaattttgatcatgaaatctcactttcgaaaatcatagaattgtcgtcaatggg | gtagtcgtctttagctgatattctcaattttctgttgctagaaaatatcgaatcatcaactgcatttaaacatccagatcaatggaaactattcacttatcttttcctcctcatcataattctcttgaaaaccaaaactaaacaattttggagggttttagaagagtgccaaaacttttaaacttttgtattgaatcaatttttaaatttctcaattgaatacttcaaaaagttgctcaaaactttatcgatccattgtcattttcacctcgagctttttgtcaatttcacatttaattc | |||
Mapping_target | R12H7 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00006749 | |||
Transcript | R12H7.1a.2 | VEP_consequence | 3_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | R12H7.1a.2:c.*103T>C | ||||
cDNA_position | 1390 | ||||
Exon_number | 11/11 | ||||
R12H7.1a.1 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R12H7.1a.1:c.*103T>C | ||||
cDNA_position | 1306 | ||||
Exon_number | 10/10 | ||||
Method | WGS_Pasadena_Quinlan |