WormBase Tree Display for Variation: WBVar00221639
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| WBVar00221639 | Name | Public_name | WBVar00221639 | ||
|---|---|---|---|---|---|
| Other_name | pas33415 | ||||
| cewivar00118107 | |||||
| R07D5.1g.1:c.18+1241G>T | |||||
| R07D5.1f.1:c.18+1241G>T | |||||
| R07D5.1c.1:c.-165-6162G>T | |||||
| R07D5.1e.1:c.268-6162G>T | |||||
| R07D5.1a.1:c.-8-5755G>T | |||||
| R07D5.1d.1:c.268-6162G>T | |||||
| HGVSg | CHROMOSOME_X:g.15133337C>A | ||||
| Sequence_details | SMap | S_parent | Sequence | R07D5 | |
| Flanking_sequences | ctacgttcagaacttagtctgaaaagttgttttcttggctttgcctatgtgcagaataaatacatttaagaaaattttcaattcagttagcaacgtttgttttggcagttcaaaggaaatagagataatatgatttctggcttggagtaaacgtcatttttgaccaagaagtcagctagaacaacaaacatacaaaaagcaccagacaaccttgtccacgagaatgggaataatatcaaataaatttctaactttgaaacaaaatgtagacacaatgaaaagtaacgtacaaatctacaa | ggaagcttggagaaaggttgggcccatcactctctatgggtgggataacgtaattattcatcgagtgagaacacattttcttaatgtcggtctcatacgctaacttaattgcttgtcgtctcctggatgcataaatttgctaccggtgcatagttaatgtccaggaccaggaaaaataacatatatattcaaaaataaatgggaacaatttttacagggagtttttgtgcgcgatggttttttcaaacttcaaggctgaaataataaaaatgcttcttaaagatggagtagcgccagtgg | |||
| Mapping_target | R07D5 | ||||
| Type_of_mutation | Substitution | C | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (24) | |||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006747 | |||
| Transcript | R07D5.1f.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1f.1:c.18+1241G>T | ||||
| Intron_number | 1/9 | ||||
| R07D5.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1c.1:c.-165-6162G>T | ||||
| Intron_number | 1/11 | ||||
| R07D5.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1a.1:c.-8-5755G>T | ||||
| Intron_number | 1/12 | ||||
| R07D5.1g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1g.1:c.18+1241G>T | ||||
| Intron_number | 2/11 | ||||
| R07D5.1d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1d.1:c.268-6162G>T | ||||
| Intron_number | 1/9 | ||||
| R07D5.1e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1e.1:c.268-6162G>T | ||||
| Intron_number | 1/10 | ||||
| Method | WGS_Pasadena_Quinlan |
