WormBase Tree Display for Variation: WBVar00233197
expand all nodes | collapse all nodes | view schema
| WBVar00233197 | Name | Public_name | WBVar00233197 | ||
|---|---|---|---|---|---|
| Other_name | pas44973 | ||||
| CE44055:p.Ser226Ter | |||||
| F53A3.4c.1:c.677del | |||||
| F53A3.4b.1:c.677del | |||||
| F53A3.4a.1:c.677del | |||||
| CE44091:p.Ser226Ter | |||||
| CE44019:p.Ser226Ter | |||||
| HGVSg | CHROMOSOME_III:g.1906764del | ||||
| Sequence_details | SMap | S_parent | Sequence | B0524 | |
| Flanking_sequences | acagaaaatccgaaattcgcaaggctatttggacgattgaacgaaaaggagccaaaaaactggatgaaatgcctggaaattggagaatttcgcgagaaaaaagaaattctctggatttacaagaatttcccatcaaaatcgagcaatttccagtgaaaaaacgcgaaaaaaccgcaaaaaattggcgaaaaatcgctgttttagtgtgtttcaagcggaaaacgacgacgaaaaatcgatatctccgccgtccaaaaacgaaaaaccaacgaaaaatcgaatttcgccgcccgaaaacct | gaaaaaccgaaaattgcggctgaaaattcgcccgagagttcgatttatcgatcgaaaattgattcgaagacgggaatgcctcgtggatccgcagaatctgatctcgtggattcggagacaggaaaaagcggaaaatttgaggattttccaggaaaaacgtacgattttaggaggaaaatgcgcgaaaaattggctcggaaattcaaatttttaactgatttttaaactttttcagtaccaaattcgaatttttcgtgattttttacctttcaaactcgtcttcccaggcttctagctcg | |||
| Mapping_target | B0524 | ||||
| Type_of_mutation | Deletion | C | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00004128 | |||
| Transcript | F53A3.4c.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | F53A3.4c.1:c.677del | ||||
| HGVSp | CE44091:p.Ser226Ter | ||||
| cDNA_position | 677 | ||||
| CDS_position | 677 | ||||
| Protein_position | 226 | ||||
| Exon_number | 3/17 | ||||
| Codon_change | tCg/tg | ||||
| Amino_acid_change | S/X | ||||
| F53A3.4b.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F53A3.4b.1:c.677del | ||||
| HGVSp | CE44055:p.Ser226Ter | ||||
| cDNA_position | 677 | ||||
| CDS_position | 677 | ||||
| Protein_position | 226 | ||||
| Exon_number | 3/24 | ||||
| Codon_change | tCg/tg | ||||
| Amino_acid_change | S/X | ||||
| F53A3.4a.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F53A3.4a.1:c.677del | ||||
| HGVSp | CE44019:p.Ser226Ter | ||||
| cDNA_position | 686 | ||||
| CDS_position | 677 | ||||
| Protein_position | 226 | ||||
| Exon_number | 4/24 | ||||
| Codon_change | tCg/tg | ||||
| Amino_acid_change | S/X | ||||
| Method | WGS_Pasadena_Quinlan |
