WormBase Tree Display for Variation: WBVar00237727
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| WBVar00237727 | Name | Public_name | WBVar00237727 | ||
|---|---|---|---|---|---|
| Other_name | pas49503 | ||||
| R07D5.1i.1:c.*270del | |||||
| R07D5.1e.1:c.*270del | |||||
| R07D5.1a.1:c.*270del | |||||
| R07D5.1g.1:c.*270del | |||||
| R07D5.1a.2:c.*270del | |||||
| R07D5.1c.1:c.*270del | |||||
| HGVSg | CHROMOSOME_X:g.15121552del | ||||
| Sequence_details | SMap | S_parent | Sequence | R07D5 | |
| Flanking_sequences | acagtcttgaacaggtttcagatataaagaaaggactagaataacacatttttggcaaatttaattttgaaatatggcaagatgaaatgagattttcatccagatcaattgagttcgtagggaaagtcaaaaggggggagaagctgaaattaaggtagcaagtcacaacataagacacgtgtaatccacacaacaattttttgagagactgaaaatatgaaatatattccggtagtttaattgttgtgagtcagtttgaaagagagatgaaaatttaaaaaaaaattactctacatcttg | tgatgaacttttgaaagaacaagagaagttttgaggtgaaatggaaaaggaaaggttttctgaattttgattattaatactgaagtttaaatttttgaagagatttctgatgacactgcaccggtttgtgaaaagcaagtttgttaaagcgcaatttgaaataaaacagactagaattcaaaacaaaagacacacacacacagaatttcttgtcttggtgaagctctgatgaaagaattagaagtgatatacatagttctagaggaagatcagtctatcgtcccttgaccgtgttccgc | |||
| Mapping_target | R07D5 | ||||
| Type_of_mutation | Deletion | A | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00006747 | |||
| Transcript | R07D5.1i.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1i.1:c.*270del | ||||
| cDNA_position | 2086 | ||||
| Exon_number | 12/12 | ||||
| R07D5.1a.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1a.2:c.*270del | ||||
| cDNA_position | 2015 | ||||
| Exon_number | 12/12 | ||||
| R07D5.1c.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1c.1:c.*270del | ||||
| cDNA_position | 1960 | ||||
| Exon_number | 12/12 | ||||
| R07D5.1a.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1a.1:c.*270del | ||||
| cDNA_position | 1916 | ||||
| Exon_number | 13/13 | ||||
| R07D5.1g.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1g.1:c.*270del | ||||
| cDNA_position | 1734 | ||||
| Exon_number | 12/12 | ||||
| R07D5.1e.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1e.1:c.*270del | ||||
| cDNA_position | 1905 | ||||
| Exon_number | 11/11 | ||||
| Method | WGS_Pasadena_Quinlan |
