WormBase Tree Display for Variation: WBVar00241375
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WBVar00241375 | Evidence | Paper_evidence | WBPaper00001234 | ||
---|---|---|---|---|---|
Name | Public_name | r621 | |||
Other_name | CE09349:p.Lys1653ArgfsTer9 | ||||
F11C3.3.1:c.4958_5283del | |||||
HGVSg | CHROMOSOME_I:g.14856890_14857270del | ||||
Sequence_details | SMap | S_parent | Sequence | F32A7 | |
Flanking_sequences | aggctaacgccgatgcccagaagaacttga | gagcgctccaagaaggctattgctgatgcc | |||
Mapping_target | F32A7 | ||||
Type_of_mutation | Deletion | ||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Laboratory | TR | ||||
Status | Live | ||||
Affects | Gene | WBGene00006789 | |||
Transcript | F11C3.3.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant | ||
VEP_impact | HIGH | ||||
HGVSc | F11C3.3.1:c.4958_5283del | ||||
HGVSp | CE09349:p.Lys1653ArgfsTer9 | ||||
cDNA_position | 4990-5315 | ||||
CDS_position | 4958-5283 | ||||
Protein_position | 1653-1761 | ||||
Intron_number | 7/10 | ||||
Exon_number | 7-8/11 | ||||
Codon_change | aAGAGATACCAAGAGCAAGTCCGCGAGTTGCAATTGCAAGTCGAGGAGGAGCAACGCAATGGAGCCGACACCCGTGAACAATTCTTCAACGCCGAGAAGCGCGCCACTCTTCTTCAATCCGAGAAGGAAGAACTTTTGGTTGCCAACGAGGCCGCCGAGAGAGCCCGCAAGCAAGCCGAGTATGAAGCCGCCGATGCTCGTGATCAAGCCAACGAAGCCAACGCTCAAGTCAGCAGCTTGACTTCTGCCAAGAGAAAGCTCGAGGGAGAAATCCAAGCCATTCATGTAAGTTTTAGATATTGACATCTAGTTTTTCAGTCTATTCATGTGAATCTTTCAGGCCGACCTCGATGAGACCCTCAACGAGTACAAGGCCGCTGAG/a | ||||
Amino_acid_change | KRYQEQVRELQLQVEEEQRNGADTREQFFNAEKRATLLQSEKEELLVANEAAERARKQAEYEAADARDQANEANAQVSSLTSAKRKLEGEIQAIHVSFRY*HLVFQSIHVNLSGRPR*DPQRVQGR*X/X | ||||
Genetics | Interpolated_map_position | I | 27.96 | ||
Reference | WBPaper00001234 | ||||
Method | Deletion_allele |