WormBase Tree Display for Variation: WBVar00242089
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| WBVar00242089 | Evidence | Paper_evidence | WBPaper00004128 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | s1502 | |||||
| Other_name | K11C4.3b.1:c.1726C>T | ||||||
| K11C4.3a.1:c.1726C>T | |||||||
| CE12112:p.Gln645Ter | |||||||
| K11C4.3d.1:c.1726C>T | |||||||
| K11C4.3c.1:c.1933C>T | |||||||
| CE28604:p.Gln576Ter | |||||||
| CE47919:p.Gln576Ter | |||||||
| CE48478:p.Gln576Ter | |||||||
| HGVSg | CHROMOSOME_V:g.6884376C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | K11C4 | |||
| Flanking_sequences | attggagaacgagttaacaattctattgct | aagctcaacgcttccgaaatccagatggac | |||||
| Mapping_target | K11C4 | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00004128 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000590 | ||||||
| WBStrain00047707 | |||||||
| Laboratory | BC | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00006803 | |||||
| Transcript | K11C4.3c.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | K11C4.3c.1:c.1933C>T | ||||||
| HGVSp | CE12112:p.Gln645Ter | ||||||
| cDNA_position | 1994 | ||||||
| CDS_position | 1933 | ||||||
| Protein_position | 645 | ||||||
| Exon_number | 6/13 | ||||||
| Codon_change | Caa/Taa | ||||||
| Amino_acid_change | Q/* | ||||||
| K11C4.3d.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | K11C4.3d.1:c.1726C>T | ||||||
| HGVSp | CE48478:p.Gln576Ter | ||||||
| cDNA_position | 1726 | ||||||
| CDS_position | 1726 | ||||||
| Protein_position | 576 | ||||||
| Exon_number | 6/14 | ||||||
| Codon_change | Caa/Taa | ||||||
| Amino_acid_change | Q/* | ||||||
| K11C4.3a.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | K11C4.3a.1:c.1726C>T | ||||||
| HGVSp | CE28604:p.Gln576Ter | ||||||
| cDNA_position | 1774 | ||||||
| CDS_position | 1726 | ||||||
| Protein_position | 576 | ||||||
| Exon_number | 7/14 | ||||||
| Codon_change | Caa/Taa | ||||||
| Amino_acid_change | Q/* | ||||||
| K11C4.3b.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | K11C4.3b.1:c.1726C>T | ||||||
| HGVSp | CE47919:p.Gln576Ter | ||||||
| cDNA_position | 1778 | ||||||
| CDS_position | 1726 | ||||||
| Protein_position | 576 | ||||||
| Exon_number | 7/16 | ||||||
| Codon_change | Caa/Taa | ||||||
| Amino_acid_change | Q/* | ||||||
| Genetics | Interpolated_map_position | V | 0.414088 | ||||
| Description | Phenotype | WBPhenotype:0000050 | Paper_evidence | WBPaper00001474 | |||
| Curator_confirmed | WBPerson712 | ||||||
| Remark | hatches | Paper_evidence | WBPaper00001474 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Reference | WBPaper00001474 | ||||||
| WBPaper00004128 | |||||||
| Method | Substitution_allele |
