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WormBase Tree Display for Variation: WBVar00244280

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Name Class

WBVar00244280EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00244280
Other_namesnp_F17E5[2]
cewivar00157785
F17E5.1a.1:c.1302+273G>C
F17E5.1b.1:c.279+273G>C
HGVSgCHROMOSOME_X:g.12404977C>G
Sequence_detailsSMapS_parentSequenceF17E5
Flanking_sequencesaacgggacgaaactggcgggtgtgcgtgaaaactgattggtctcgcggga
Mapping_targetF17E5
Type_of_mutationSubstitutionCG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (24)
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00002991
TranscriptF17E5.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF17E5.1a.1:c.1302+273G>C
Intron_number13/25
F17E5.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF17E5.1b.1:c.279+273G>C
Intron_number2/14
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.6951 VarS=CG
Enzymes. Bristol-specific: [BceAI,BctI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_F17E5.2
[20040130 db] this Allele was previously named snp_F17E5.2
[20090224 db] original Wicks name : F17E5:13514..14392@257 Psnp=0.6951 VarS=CG
[20090224 db] original Wicks id : vc86g09.s1@200,g,32
[20090224 db] Snip-SNP
MethodSNP_Wicks