WormBase Tree Display for Variation: WBVar00244280
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WBVar00244280 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00244280 | |||
Other_name | snp_F17E5[2] | ||||
cewivar00157785 | |||||
F17E5.1a.1:c.1302+273G>C | |||||
F17E5.1b.1:c.279+273G>C | |||||
HGVSg | CHROMOSOME_X:g.12404977C>G | ||||
Sequence_details | SMap | S_parent | Sequence | F17E5 | |
Flanking_sequences | aacgggacgaaactggcgggtgtgc | gtgaaaactgattggtctcgcggga | |||
Mapping_target | F17E5 | ||||
Type_of_mutation | Substitution | C | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (24) | |||||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00002991 | |||
Transcript | F17E5.1a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F17E5.1a.1:c.1302+273G>C | ||||
Intron_number | 13/25 | ||||
F17E5.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F17E5.1b.1:c.279+273G>C | ||||
Intron_number | 2/14 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.6951 VarS=CG | ||||
Enzymes. Bristol-specific: [BceAI,BctI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_F17E5.2 | |||||
[20040130 db] this Allele was previously named snp_F17E5.2 | |||||
[20090224 db] original Wicks name : F17E5:13514..14392@257 Psnp=0.6951 VarS=CG | |||||
[20090224 db] original Wicks id : vc86g09.s1@200,g,32 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |