WormBase Tree Display for Variation: WBVar00247620
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WBVar00247620 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247620 | |||
Other_name | snp_Y54G2A[8] | ||||
cewivar00496940 | |||||
Y54G2A.38.1:c.715-128C>A | |||||
HGVSg | CHROMOSOME_IV:g.2761704C>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | |
Flanking_sequences | tctgcgtctcccccccccccccccc | cacactctccctgcctaaacttcaa | |||
Mapping_target | Y54G2A | ||||
Type_of_mutation | Substitution | C | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WBStrain00022887 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00043061 | |||
Transcript | Y54G2A.38.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.38.1:c.715-128C>A | ||||
Intron_number | 4/5 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9407 VarS=AC | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y54G2.8 | |||||
[20040130 db] this Allele was previously named snp_Y54G2.8 | |||||
[20090224 db] this Variation was previously named snp_Y54G2[8] | |||||
[20090224 db] original Wicks name : Y54G2A:11088..11808@396 Psnp=0.9407 VarS=AC | |||||
[20090224 db] original Wicks id : vl29e11.s1@458,a,53 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |