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WormBase Tree Display for Variation: WBVar00247620

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Name Class

WBVar00247620EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00247620
Other_namesnp_Y54G2A[8]
cewivar00496940
Y54G2A.38.1:c.715-128C>A
HGVSgCHROMOSOME_IV:g.2761704C>A
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencestctgcgtctcccccccccccccccccacactctccctgcctaaacttcaa
Mapping_targetY54G2A
Type_of_mutationSubstitutionCA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WBStrain00022887From_analysisMillion_mutation_project_reanalysis
WBStrain00022930From_analysisMillion_mutation_project_reanalysis
WBStrain00023286From_analysisMillion_mutation_project_reanalysis
WBStrain00027648From_analysisMillion_mutation_project_reanalysis
WBStrain00027660From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00043061
TranscriptY54G2A.38.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.38.1:c.715-128C>A
Intron_number4/5
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9407 VarS=AC
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_Y54G2.8
[20040130 db] this Allele was previously named snp_Y54G2.8
[20090224 db] this Variation was previously named snp_Y54G2[8]
[20090224 db] original Wicks name : Y54G2A:11088..11808@396 Psnp=0.9407 VarS=AC
[20090224 db] original Wicks id : vl29e11.s1@458,a,53
[20090224 db] Snip-SNP
MethodSNP_Wicks